PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pbr031038.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
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Family | C3H | ||||||||
Protein Properties | Length: 474aa MW: 50278.9 Da PI: 8.3525 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 36.5 | 8.1e-12 | 49 | 73 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++ C++++rtG+C yG+rC+++H++ Pbr031038.1 49 EADCSYYLRTGICGYGSRCRYNHPR 73 689********************96 PP | |||||||
2 | zf-CCCH | 39.5 | 9.3e-13 | 95 | 119 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++ C++++rtGtCk+G++Ck++H++ Pbr031038.1 95 QPVCQYYMRTGTCKFGASCKYHHPK 119 689********************96 PP | |||||||
3 | zf-CCCH | 36.5 | 7.9e-12 | 139 | 165 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++ C+++ +tG+Ck+G++CkF+H++ Pbr031038.1 139 PGERDCSYYVKTGQCKFGATCKFHHPQ 165 5789*********************97 PP | |||||||
4 | zf-CCCH | 38.9 | 1.4e-12 | 298 | 324 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C++++rtG Ck+G++C+++H+p Pbr031038.1 298 PGQPECQYYMRTGDCKFGSSCRYHHPP 324 5789*********************97 PP | |||||||
5 | zf-CCCH | 35.4 | 1.7e-11 | 346 | 369 | 3 | 26 |
S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHg 26 +lC ++++ G Ck+G+ CkF H+ Pbr031038.1 346 APLCTHYQQRGACKFGSACKFDHP 369 68*********************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 13.676 | 46 | 74 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 3.3E-5 | 46 | 73 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 3.92E-6 | 49 | 74 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.9E-9 | 49 | 73 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 6.9E-5 | 52 | 73 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.882 | 92 | 120 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 2.7E-7 | 92 | 119 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 2.22E-6 | 93 | 119 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.4E-10 | 95 | 119 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 2.8E-5 | 97 | 118 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.962 | 138 | 166 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 5.7E-6 | 138 | 165 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 3.1E-9 | 140 | 165 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 7.85E-6 | 141 | 166 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 3.3E-4 | 144 | 164 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 16.37 | 297 | 325 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.2E-6 | 297 | 324 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 7.5E-10 | 299 | 324 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 8.77E-6 | 301 | 325 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.0E-4 | 303 | 324 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.403 | 343 | 371 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 3.3E-6 | 343 | 370 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 4.9E-9 | 346 | 369 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 8.63E-6 | 347 | 373 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 2.6E-5 | 348 | 368 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 474 aa Download sequence Send to blast |
MERYGRTAEG SQSDPSPEWN LPRPETGLEE AMWQLGLGPG ESYPERSDEA DCSYYLRTGI 60 CGYGSRCRYN HPRDRSVVIG AARTGGLEYP ERVGQPVCQY YMRTGTCKFG ASCKYHHPKQ 120 GGSSDSPVSL NYYGYPLRPG ERDCSYYVKT GQCKFGATCK FHHPQPAGIQ LPGPSPAPQV 180 SPVPATQTLY QNVQSSSVSS QQYGVVFARP PLTYVPSPYG QVLLSQGTIP FPGWNPYQAL 240 ASQLPSPSTQ SGVGARTLYT QLSPSAPAFP GMYQPMPLAS SLGLPTTSQK EQIFPERPGQ 300 PECQYYMRTG DCKFGSSCRY HHPPEVVQSK TTVLLSSSGL PSRPGAPLCT HYQQRGACKF 360 GSACKFDHPI GTLSYSPSAS SLADMPVAPY PVGSSIGTLA PSSSSSELRP ELSSSSGKDL 420 VSARMSSSLS TSSLSVGSTV SKGGVTPAGV QQSSQGSGPS SGSGNSTESH SSS* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pbr031038.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009339837.1 | 0.0 | PREDICTED: zinc finger CCCH domain-containing protein 58-like | ||||
Refseq | XP_018499201.1 | 0.0 | PREDICTED: zinc finger CCCH domain-containing protein 58-like | ||||
Swissprot | Q6NPN3 | 1e-155 | C3H58_ARATH; Zinc finger CCCH domain-containing protein 58 | ||||
TrEMBL | A0A498HMT8 | 0.0 | A0A498HMT8_MALDO; Uncharacterized protein | ||||
STRING | XP_009339837.1 | 0.0 | (Pyrus x bretschneideri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF983 | 34 | 117 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G47850.3 | 1e-133 | C3H family protein |
Publications ? help Back to Top | |||
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