PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr030749.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family ERF
Protein Properties Length: 155aa    MW: 17122.4 Da    PI: 10.7274
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr030749.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.61.5e-1861112155
          AP2   1 sgykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                  + y+GVr++  +++Wv+e r+p   + k+ r++lg++ tae+Aa+a++ a+++++g
  Pbr030749.1  61 PVYRGVRRRN-NNKWVCEMREP---NkKKSRIWLGTYPTAEMAARAHDVAALAFRG 112
                  68*****887.8******9998...5477************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.8E-1461112IPR001471AP2/ERF domain
SuperFamilySSF541713.33E-2262122IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.104.0E-3162122IPR001471AP2/ERF domain
SMARTSM003802.1E-2862126IPR001471AP2/ERF domain
PROSITE profilePS5103222.58962120IPR001471AP2/ERF domain
PRINTSPR003674.5E-86374IPR001471AP2/ERF domain
CDDcd000182.50E-2763122No hitNo description
PRINTSPR003674.5E-886102IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 155 aa     Download sequence    Send to blast
MNTIFSNQLS DSSEKPESSS DDTSITAQSQ LASFSDEEVI LASSRPKKRA GRRVFKETRH  60
PVYRGVRRRN NNKWVCEMRE PNKKKSRIWL GTYPTAEMAA RAHDVAALAF RGKLACLNFA  120
DSAWRLPVPA STDSVDIRRA GAGLRMAPAC SGIH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A4e-1549119371Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates cold or dehydration-inducible transcription. CBF/DREB1 factors play a key role in freezing tolerance and cold acclimation. {ECO:0000269|PubMed:11798174}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr030749.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By high-salt stress. {ECO:0000269|PubMed:11798174}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB8264940.0AB826494.2 Pyrus pyrifolia var. culta mRNA for putative C-repeat binding factor 2, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018499153.11e-111PREDICTED: dehydration-responsive element-binding protein 1F-like
SwissprotQ9LN866e-54DRE1F_ARATH; Dehydration-responsive element-binding protein 1F
TrEMBLW8VA667e-97W8VA66_PYRPY; Putative C-repeat binding factor 2
STRINGXP_009339654.13e-98(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF24333224
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G12610.19e-56ERF family protein
Publications ? help Back to Top
  1. Kazama D,Kurusu T,Mitsuda N,Ohme-Takagi M,Tada Y
    Involvement of elevated proline accumulation in enhanced osmotic stress tolerance in Arabidopsis conferred by chimeric repressor gene silencing technology.
    Plant Signal Behav, 2014. 9(3): p. e28211
    [PMID:24614501]
  2. Kazama D, et al.
    Identification of Chimeric Repressors that Confer Salt and Osmotic Stress Tolerance in Arabidopsis.
    Plants (Basel), 2013. 2(4): p. 769-85
    [PMID:27137403]
  3. Song GQ,Gao X
    Transcriptomic changes reveal gene networks responding to the overexpression of a blueberry DWARF AND DELAYED FLOWERING 1 gene in transgenic blueberry plants.
    BMC Plant Biol., 2017. 17(1): p. 106
    [PMID:28629320]
  4. Imran QM, et al.
    Transcriptome profile of NO-induced Arabidopsis transcription factor genes suggests their putative regulatory role in multiple biological processes.
    Sci Rep, 2018. 8(1): p. 771
    [PMID:29335449]