PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pbr030670.1

Organism

Pyrus bretschneideri

Taxonomic ID

225117

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus

Family

LBD

Protein Properties

Length: 264aa MW: 28638.6 Da PI: 8.564

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pbr030670.1	genome	CPETR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	100.5	1.6e-31	4	108	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkae 93 +C++C++lr++C+++C ++p++ p++q++++ +++k++G++ +++l++a pe+ r+++++sl+yeA+ r+ +P+yG+vg+++++++ql+q+++e Pbr030670.1 4 SCNGCRILRKGCSENCSIRPCLqwiksPEAQANATVFLAKFYGRAGLMNLVNAGPEHLRPAIFRSLLYEACGRIVNPIYGSVGLLWSGSWQLCQVAVE 101 6************************************************************************************************* PP DUF260 94 lallkee 100 ++l +++ Pbr030670.1 102 AVLKGQS 108 9998775 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	17.229	3	109	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	3.4E-25	4	103	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 264 aa Download sequence Send to blast
MRMSCNGCRI LRKGCSENCS IRPCLQWIKS PEAQANATVF LAKFYGRAGL MNLVNAGPEH 60 LRPAIFRSLL YEACGRIVNP IYGSVGLLWS GSWQLCQVAV EAVLKGQSIT PITSEAAANG 120 HGPPLKAYDI RHVSKDENSA ASNDPQKVKT RYRFKRSAVK PKTNKSEAAA NVDGDSKESE 180 SMISSETAEA ELFSRAEPEP ARKRREPVQD GELALELTLG LEPPSRGHHV VPVKKRRIEA 240 EFGGSSPADD GACKMELGLD YVA*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pbr030670.1

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009357119.1	0.0	PREDICTED: LOB domain-containing protein 41-like
Swissprot	Q9M886	1e-105	LBD41_ARATH; LOB domain-containing protein 41
TrEMBL	A0A498HFS4	1e-174	A0A498HFS4_MALDO; Uncharacterized protein
STRING	XP_009357119.1	0.0	(Pyrus x bretschneideri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1546	34	99

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G02550.1	8e-99	LOB domain-containing protein 41