PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr030633.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family TCP
Protein Properties Length: 391aa    MW: 43725.8 Da    PI: 9.4733
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr030633.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP130.21.9e-401362811134
          TCP   1 aagkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt............ssssaseceaesssssasnss 86 
                  aa+kkdrhski T++g+RdRRvRls+++a++fFdLqd+LG+d++sktieWLl+++ +ai +l  +            s ss sec   ++++s+ n+ 
  Pbr030633.1 136 AATKKDRHSKIFTAQGLRDRRVRLSLNVARQFFDLQDQLGLDRASKTIEWLLKKSRKAIRDLGTQkknlscsserskSLSSTSEC---DEVVSDINEV 230
                  689***********************************************************98867666554443333333444...3333333222 PP

          TCP  87 sg...kaaksaakskksqksaasalnlakesrakarararertrekmrikn 134
                  ++   +++k+    kk ++s+++   +ake rakara+arertrek++ ++
  Pbr030633.1 231 ENhvlSKEKEMVMMKKLKESKSAGAYVAKELRAKARAKARERTREKKMCTT 281
                  2256566666667777777777789****************9999866554 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036342.2E-39138278IPR005333Transcription factor, TCP
PROSITE profilePS5136932.46139197IPR017887Transcription factor TCP subgroup
PROSITE profilePS5137011.487259276IPR017888CYC/TB1, R domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048831Biological Processregulation of shoot system development
Sequence ? help Back to Top
Protein Sequence    Length: 391 aa     Download sequence    Send to blast
MFSSSSYNSN TVSPFQHNFP FSSSSSSNYP PPPPPPCANL ETCTGHTFLH HIPDPLSGQF  60
SHQNIALLAP PSHQTLTHLG VSSNTVPGSI NSNISSSCGD HHHRQYYHSN YGSISNDNII  120
PYFLHSSGED VVVAPAATKK DRHSKIFTAQ GLRDRRVRLS LNVARQFFDL QDQLGLDRAS  180
KTIEWLLKKS RKAIRDLGTQ KKNLSCSSER SKSLSSTSEC DEVVSDINEV ENHVLSKEKE  240
MVMMKKLKES KSAGAYVAKE LRAKARAKAR ERTREKKMCT TSRRPHQMLN QLNLMIEQLD  300
DHETNISSSS KVNFGDHRVN QELGSLLAKQ AHHHHRHEED QSALIKRNKM KSFSSVVSDY  360
NTTDQISSNG HLQFPNASQN WDINGAFPMP *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A2e-15144197154Putative transcription factor PCF6
5zkt_B2e-15144197154Putative transcription factor PCF6
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00215DAPTransfer from AT1G67260Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr030633.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009357031.10.0PREDICTED: transcription factor TCP1-like
TrEMBLA0A498J3L20.0A0A498J3L2_MALDO; Uncharacterized protein
STRINGXP_009357031.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17383294
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67260.22e-27TCP family protein