PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pbr030521.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
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Family | bHLH | ||||||||
Protein Properties | Length: 252aa MW: 28915.5 Da PI: 8.4197 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 47.3 | 3.6e-15 | 80 | 131 | 1 | 55 |
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 ++ +hn+ Er RR++iN+ ++ Lr+llP + + kKls + +A +YI +Lq Pbr030521.1 80 KKLNHNASERDRRKKINNLYASLRSLLPAD---QTKKLSIPNTISHALKYIPELQ 131 6789**************************...9******************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 14.094 | 79 | 130 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 5.4E-13 | 80 | 147 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 7.33E-16 | 80 | 147 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.89E-10 | 80 | 135 | No hit | No description |
Pfam | PF00010 | 2.1E-12 | 80 | 131 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.1E-9 | 85 | 136 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010106 | Biological Process | cellular response to iron ion starvation | ||||
GO:0055072 | Biological Process | iron ion homeostasis | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 252 aa Download sequence Send to blast |
MLALSPPLFS TIGWSLDQDS ISHENHNYFY SKDITTTNDD QTADSFLHLL PSHHPKVDLD 60 RSTPSITVTG DYSSVCPMAK KLNHNASERD RRKKINNLYA SLRSLLPADQ TKKLSIPNTI 120 SHALKYIPEL QKQVEGLNRK REELLSRASK QEDAMHKEKK IKSTARSSQS AVSTYRLNDR 180 EVAIQISTFK THNNLLFEIL QHLEEEGLQL ENASFFESYG GRVFYNLHLQ VDRTYRLERE 240 NLSEKLMSFY A* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pbr030521.1 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KT987228 | 0.0 | KT987228.1 Pyrus calleryana bHLH transcription factor (IRO2) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009339562.1 | 0.0 | PREDICTED: transcription factor ORG2-like | ||||
TrEMBL | A0A165CPQ3 | 0.0 | A0A165CPQ3_PYRCA; BHLH transcription factor | ||||
STRING | XP_009339562.1 | 0.0 | (Pyrus x bretschneideri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2402 | 33 | 79 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G56970.1 | 4e-49 | bHLH family protein |