PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr030459.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family NAC
Protein Properties Length: 397aa    MW: 43970.9 Da    PI: 4.5027
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr030459.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM154.74.1e-4881361129
          NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskk 96 
                  +ppGfrF+Ptd elv++yLk+kv gk+l+  ++++evdi+k+ PwdLp k + ++++ +wyfF+++++ky+tg r++r+t+ gyWkatg d++vl  +
  Pbr030459.1   8 MPPGFRFSPTDVELVQYYLKRKVMGKRLRY-NFVAEVDIHKYAPWDLPgKsSWQSGDLKWYFFCPTERKYPTGVRTKRTTECGYWKATGIDRSVLY-N 103
                  79**************************99.89***************6346667788**************************************.9 PP

          NAM  97 gelvglkktLvfykgrapkgektdWvmheyrle 129
                  ge+ g  ktLvf++grapkg +tdWvmheyrle
  Pbr030459.1 104 GEVAGKIKTLVFHTGRAPKGDRTDWVMHEYRLE 136
                  99*****************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.7E-575158IPR003441NAC domain
PROSITE profilePS5100554.1298158IPR003441NAC domain
PfamPF023655.8E-259135IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 397 aa     Download sequence    Send to blast
MGKGKSLMPP GFRFSPTDVE LVQYYLKRKV MGKRLRYNFV AEVDIHKYAP WDLPGKSSWQ  60
SGDLKWYFFC PTERKYPTGV RTKRTTECGY WKATGIDRSV LYNGEVAGKI KTLVFHTGRA  120
PKGDRTDWVM HEYRLESKDL ANQGVPQESY VLCTIFQKEG PGPRNGAQYG APLMEEDWSD  180
DEAENCSEVV PHANMPVPNL VLPSDYNSSI TTSMYTHDGT RIGPSSESCI SDVVPLSCNV  240
SQLVSSNHAT VEEPHTSEDD ILSMLACFSE ESPSLFKENE KNEELGNVIP IGNASATPHL  300
VINDTYDNLG DLGKAARVGE EGCSFSSLPN SVCAPGQIPL GDDEQYLELD DLGEPLNYRD  360
STYTQPPSMF GQPHASLGET SFQGEDQLNV FDNVNF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A8e-44815917166NO APICAL MERISTEM PROTEIN
1ut4_B8e-44815917166NO APICAL MERISTEM PROTEIN
1ut7_A8e-44815917166NO APICAL MERISTEM PROTEIN
1ut7_B8e-44815917166NO APICAL MERISTEM PROTEIN
3swm_A9e-44815920169NAC domain-containing protein 19
3swm_B9e-44815920169NAC domain-containing protein 19
3swm_C9e-44815920169NAC domain-containing protein 19
3swm_D9e-44815920169NAC domain-containing protein 19
3swp_A9e-44815920169NAC domain-containing protein 19
3swp_B9e-44815920169NAC domain-containing protein 19
3swp_C9e-44815920169NAC domain-containing protein 19
3swp_D9e-44815920169NAC domain-containing protein 19
4dul_A8e-44815917166NAC domain-containing protein 19
4dul_B8e-44815917166NAC domain-containing protein 19
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr030459.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009339471.10.0PREDICTED: NAC domain-containing protein 82-like
TrEMBLA0A498K3380.0A0A498K338_MALDO; Uncharacterized protein
STRINGXP_009339471.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF33023465
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G09330.41e-96NAC domain containing protein 82