PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pbr030439.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
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Family | B3 | ||||||||
Protein Properties | Length: 435aa MW: 49068.8 Da PI: 9.3822 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 46.1 | 9.1e-15 | 88 | 175 | 1 | 96 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 f+k +++s+v++ +l+lpk+f+ + + + tltle e g++++v++ + ++ + ++GW++F an+L +g +vF+l++ +f +v + Pbr030439.1 88 FVKSMIRSNVSSCFCLTLPKQFCHLY--LPLHDATLTLEVEGGEKYRVTF--LGERR--IVSAGWQKFSTANKLLVGNLLVFRLVRPLKF--KVYI 175 89*********************555..3455679***************..66653..4688********************9986666..4444 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 1.4E-16 | 85 | 177 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 2.66E-21 | 86 | 175 | No hit | No description |
SuperFamily | SSF101936 | 1.28E-19 | 86 | 178 | IPR015300 | DNA-binding pseudobarrel domain |
SMART | SM01019 | 3.9E-16 | 88 | 179 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 12.294 | 88 | 179 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.5E-12 | 88 | 175 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 435 aa Download sequence Send to blast |
MLAVRLQVEV EQREQTLETK QNVLSTCRRP SRPTHITKRK VPGHPQKHGD GGCKRKRTIF 60 DSFKDHEISF VRNQVQDIQA NIGADPVFVK SMIRSNVSSC FCLTLPKQFC HLYLPLHDAT 120 LTLEVEGGEK YRVTFLGERR IVSAGWQKFS TANKLLVGNL LVFRLVRPLK FKVYIMGRHS 180 LAEVDAAFSL LKMKSCATKE VFGKKHLMTP PRDVSQVNIQ KKSLKLGTNP ELDANQSEDD 240 NEDFTSNLAA DITIQGPAAD FEDVRIIDNF PILVNGVTID TQLSAQVRTI YYDLCCSQGS 300 FLHDNILKSI DSKLAAEIIT ETTNIANAIR ACKLPPSRAD CVMQEKTLHA FELLGMDVGF 360 LRARLKRCLS VASKYEVAGE SKRYLEGKVE QVCMRDKMRD LDSKLSELKE TMESFDAKIK 420 ALKKNSRKRE LIFP* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 37 | 56 | KRKVPGHPQKHGDGGCKRKR |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pbr030439.1 |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009339453.1 | 0.0 | PREDICTED: B3 domain-containing protein Os01g0234100-like | ||||
TrEMBL | A0A498IXN0 | 0.0 | A0A498IXN0_MALDO; Uncharacterized protein | ||||
STRING | XP_009339452.1 | 0.0 | (Pyrus x bretschneideri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1007 | 33 | 98 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G42700.1 | 3e-24 | B3 family protein |