PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr030439.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family B3
Protein Properties Length: 435aa    MW: 49068.8 Da    PI: 9.3822
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr030439.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B346.19.1e-1588175196
                  EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
           B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 
                  f+k +++s+v++  +l+lpk+f+  +   +  + tltle e g++++v++   + ++  + ++GW++F  an+L +g  +vF+l++  +f  +v +
  Pbr030439.1  88 FVKSMIRSNVSSCFCLTLPKQFCHLY--LPLHDATLTLEVEGGEKYRVTF--LGERR--IVSAGWQKFSTANKLLVGNLLVFRLVRPLKF--KVYI 175
                  89*********************555..3455679***************..66653..4688********************9986666..4444 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.4E-1685177IPR015300DNA-binding pseudobarrel domain
CDDcd100172.66E-2186175No hitNo description
SuperFamilySSF1019361.28E-1986178IPR015300DNA-binding pseudobarrel domain
SMARTSM010193.9E-1688179IPR003340B3 DNA binding domain
PROSITE profilePS5086312.29488179IPR003340B3 DNA binding domain
PfamPF023621.5E-1288175IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 435 aa     Download sequence    Send to blast
MLAVRLQVEV EQREQTLETK QNVLSTCRRP SRPTHITKRK VPGHPQKHGD GGCKRKRTIF  60
DSFKDHEISF VRNQVQDIQA NIGADPVFVK SMIRSNVSSC FCLTLPKQFC HLYLPLHDAT  120
LTLEVEGGEK YRVTFLGERR IVSAGWQKFS TANKLLVGNL LVFRLVRPLK FKVYIMGRHS  180
LAEVDAAFSL LKMKSCATKE VFGKKHLMTP PRDVSQVNIQ KKSLKLGTNP ELDANQSEDD  240
NEDFTSNLAA DITIQGPAAD FEDVRIIDNF PILVNGVTID TQLSAQVRTI YYDLCCSQGS  300
FLHDNILKSI DSKLAAEIIT ETTNIANAIR ACKLPPSRAD CVMQEKTLHA FELLGMDVGF  360
LRARLKRCLS VASKYEVAGE SKRYLEGKVE QVCMRDKMRD LDSKLSELKE TMESFDAKIK  420
ALKKNSRKRE LIFP*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13756KRKVPGHPQKHGDGGCKRKR
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr030439.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009339453.10.0PREDICTED: B3 domain-containing protein Os01g0234100-like
TrEMBLA0A498IXN00.0A0A498IXN0_MALDO; Uncharacterized protein
STRINGXP_009339452.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF10073398
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G42700.13e-24B3 family protein