PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pbr030271.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
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Family | B3 | ||||||||
Protein Properties | Length: 229aa MW: 26119 Da PI: 10.0436 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 63.6 | 3.1e-20 | 102 | 195 | 3 | 98 |
EE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS B3 3 kvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 ++ +++++ + + l l kfa+eh + ++ ++l+ + gr+W vkl ++ +++ +++GW +Fv++ngL+ gD++vF+l++++e v +fr Pbr030271.1 102 TIVMHPSYIQANTLNLEAKFAREHLLYR-THDNVILRVSGGRTWPVKL-HQYSKNVLKFQSGWMKFVQDNGLEIGDVCVFMLINNTEHLIDVVIFR 195 5667788888889***********4443.3348***************.455555599*************************9866556666665 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 8.7E-24 | 93 | 195 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 4.12E-23 | 94 | 195 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 2.37E-20 | 99 | 195 | No hit | No description |
SMART | SM01019 | 2.0E-13 | 100 | 197 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 13.86 | 100 | 197 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.3E-17 | 101 | 195 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 229 aa Download sequence Send to blast |
MSQMEETDED DDCVEILDDS PPCLKTKKKS PIATHRHKKN RTGSISTSEN HMKKFGGSSW 60 TKELVKRRPD QVPRMMNPLT VSGTNRALQR ARAFKSEYPC CTIVMHPSYI QANTLNLEAK 120 FAREHLLYRT HDNVILRVSG GRTWPVKLHQ YSKNVLKFQS GWMKFVQDNG LEIGDVCVFM 180 LINNTEHLID VVIFRGRETA DCTFSPGKAR SISKDQFKSK NKKVAGWM* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pbr030271.1 |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009365446.1 | 1e-139 | PREDICTED: B3 domain-containing protein Os11g0197600-like | ||||
Refseq | XP_028953967.1 | 1e-136 | B3 domain-containing protein LOC_Os12g40080-like | ||||
TrEMBL | A0A498HHW4 | 1e-133 | A0A498HHW4_MALDO; Uncharacterized protein | ||||
STRING | XP_009365446.1 | 1e-139 | (Pyrus x bretschneideri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF14896 | 4 | 12 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G49480.1 | 4e-13 | related to vernalization1 1 |