PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr030244.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family AP2
Protein Properties Length: 654aa    MW: 72565.4 Da    PI: 7.3171
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr030244.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP250.93.7e-16321380155
          AP2   1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                  s+y+GV++++++gr++A+++d  ++  g  ++ ++++lg ++ +e+Aa+a++ a++k++g
  Pbr030244.1 321 SQYRGVTRHRWTGRYEAHLWDnSCKkEGqsRKgRQVYLGGYDMEEKAARAYDLAALKYWG 380
                  78*******************988886678446*************************98 PP
2AP2461.3e-14425474355
          AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                  y+GV+++++ grW A+I  +     +k  +lg+f t eeAa+a++ a+ k++g
  Pbr030244.1 425 YRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 474
                  9***************988532...5************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000186.65E-22321388No hitNo description
PfamPF008476.4E-13321380IPR001471AP2/ERF domain
SuperFamilySSF541711.24E-16321389IPR016177DNA-binding domain
SMARTSM003804.9E-29322394IPR001471AP2/ERF domain
PROSITE profilePS5103219.203322388IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.4E-16322389IPR001471AP2/ERF domain
PRINTSPR003675.0E-6323334IPR001471AP2/ERF domain
CDDcd000181.39E-24423484No hitNo description
SuperFamilySSF541711.7E-17423483IPR016177DNA-binding domain
SMARTSM003806.0E-33424488IPR001471AP2/ERF domain
PROSITE profilePS5103219.203424482IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.2E-18424482IPR001471AP2/ERF domain
PfamPF008471.8E-9425474IPR001471AP2/ERF domain
PRINTSPR003675.0E-6464484IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 654 aa     Download sequence    Send to blast
MKSMSNDGSN SNSNNNWLDF SLSPNMKIES SSSSVAAAAS FFHSPPHFNY GIYYGLEGGG  60
GGRGEDNSPV LYSPFSMMPL KSDGSLCIME ALNRSQHHLQ AAMVTTTSPT PKLEDFFGGA  120
TMGTHQYESS DREAMALSLD SMFYLQNPHP TTQHHVPSNH QNLMSHSLQQ HQQQTQQHQQ  180
QYSSSYYSGL RTHATILEEG HKQTHVSADY YNMHPARIGI DQSIAEMKSW VSRNNAMDQN  240
NMAAGCMGEN GGLSYGDLQC LSLSMSPGSQ SSCVTSSQQI SPTVTTDCVT LVDTKKRGLE  300
KVDQKQIVHR KSLDTFGQRT SQYRGVTRHR WTGRYEAHLW DNSCKKEGQS RKGRQVYLGG  360
YDMEEKAARA YDLAALKYWG PSTHINFPLE DYKKELEDMK NMTRQEYVAH LRRKSSGFSR  420
GASMYRGVTR HHQHGRWQAR IGRVAGNKDL YLGTFSTQEE AAEAYDIAAI KFRGLNAVTN  480
FDITRYDVDQ IMSSNTLLAS ELAKRNKEVV LVNEATNQNN VTQIGNGEAV VSRKNISEGE  540
DWKMALYQFS SQQLDQKQPS TETRNVTQAE AEDFGKMGAA HFSNASSLVT SLGSSREGSP  600
DKSSEPSFFG MPPSASKFFT SSSDAVSSWI PTVQSRPGLT NPHMPIFAAW TDA*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr030244.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009339385.10.0PREDICTED: AP2-like ethylene-responsive transcription factor ANT
TrEMBLA0A498I3340.0A0A498I334_MALDO; Uncharacterized protein
STRINGXP_009339385.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF91634114
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37750.11e-134AP2 family protein