PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr030238.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family B3
Protein Properties Length: 316aa    MW: 36237.9 Da    PI: 5.9351
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr030238.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B347.14.4e-15221141100
                  EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
           B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                  ffk+ + +d++k + + +p kf+ ++g     s  ++l+ +sg +We++l  r+++g+++++kGW +F +   L+    ++F ++g+s+f  +v++f+
  Pbr030238.1  22 FFKIIV-NDTSKYNKIKIPTKFVMKYGDG--LSNSVVLKVPSGLEWEMEL--RRYDGEVWFEKGWPDFSHFYSLDFAHWLLFGYEGNSKF--LVRIFD 112
                  667664.57777888***********755..7778***************..**********************************9999..*****9 PP

                  SS CS
           B3  99 ks 100
                  +s
  Pbr030238.1 113 RS 114
                  85 PP

2B360.62.6e-19219304188
                  EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.S CS
           B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.s 88 
                  f+kv +++ +l+ + l+l  kf+++h + k+++  + l+ ++gr+W+vkl  +   gr+ l +GWk+Fv++n L  gD++vF l+++ +
  Pbr030238.1 219 FLKVAMQPTYLQYCYLSLRSKFVKKHLS-KTCD-HVFLRRSDGRTWRVKLE-QYETGRCRLLSGWKKFVQENSLAIGDVCVFVLIDNiK 304
                  899***********************54.4565.9***************3.33334477889********************998644 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019366.28E-2215115IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.3E-2115115IPR015300DNA-binding pseudobarrel domain
CDDcd100175.43E-1620112No hitNo description
PROSITE profilePS5086312.15321114IPR003340B3 DNA binding domain
SMARTSM010191.1E-1022114IPR003340B3 DNA binding domain
PfamPF023628.9E-1222113IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.108.9E-22211308IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.2E-20213311IPR015300DNA-binding pseudobarrel domain
CDDcd100172.15E-15219313No hitNo description
PROSITE profilePS5086313.69219315IPR003340B3 DNA binding domain
SMARTSM010193.9E-14219315IPR003340B3 DNA binding domain
PfamPF023625.1E-17219304IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 316 aa     Download sequence    Send to blast
MACLTQETDD CPTTYSPTTP HFFKIIVNDT SKYNKIKIPT KFVMKYGDGL SNSVVLKVPS  60
GLEWEMELRR YDGEVWFEKG WPDFSHFYSL DFAHWLLFGY EGNSKFLVRI FDRSCTEIDY  120
PLQTPEEEET DEDSISNNSD HDSSDDARDD YEAFSGDDSV QILDEFSPCQ RETKGRSPLP  180
CPRPHKENIT SSGGKAGPSA RAKAKALQMV SSFTSEYPFL KVAMQPTYLQ YCYLSLRSKF  240
VKKHLSKTCD HVFLRRSDGR TWRVKLEQYE TGRCRLLSGW KKFVQENSLA IGDVCVFVLI  300
DNIKPLFNVI FFPTA*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr030238.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009339380.10.0PREDICTED: B3 domain-containing transcription factor VRN1-like
TrEMBLA0A498HXF00.0A0A498HXF0_MALDO; Uncharacterized protein
STRINGXP_009339380.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF9834369
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49475.14e-24B3 family protein