PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pbr030238.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
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Family | B3 | ||||||||
Protein Properties | Length: 316aa MW: 36237.9 Da PI: 5.9351 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 47.1 | 4.4e-15 | 22 | 114 | 1 | 100 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 ffk+ + +d++k + + +p kf+ ++g s ++l+ +sg +We++l r+++g+++++kGW +F + L+ ++F ++g+s+f +v++f+ Pbr030238.1 22 FFKIIV-NDTSKYNKIKIPTKFVMKYGDG--LSNSVVLKVPSGLEWEMEL--RRYDGEVWFEKGWPDFSHFYSLDFAHWLLFGYEGNSKF--LVRIFD 112 667664.57777888***********755..7778***************..**********************************9999..*****9 PP SS CS B3 99 ks 100 +s Pbr030238.1 113 RS 114 85 PP | |||||||
2 | B3 | 60.6 | 2.6e-19 | 219 | 304 | 1 | 88 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.S CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.s 88 f+kv +++ +l+ + l+l kf+++h + k+++ + l+ ++gr+W+vkl + gr+ l +GWk+Fv++n L gD++vF l+++ + Pbr030238.1 219 FLKVAMQPTYLQYCYLSLRSKFVKKHLS-KTCD-HVFLRRSDGRTWRVKLE-QYETGRCRLLSGWKKFVQENSLAIGDVCVFVLIDNiK 304 899***********************54.4565.9***************3.33334477889********************998644 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 6.28E-22 | 15 | 115 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 2.3E-21 | 15 | 115 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 5.43E-16 | 20 | 112 | No hit | No description |
PROSITE profile | PS50863 | 12.153 | 21 | 114 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 1.1E-10 | 22 | 114 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 8.9E-12 | 22 | 113 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 8.9E-22 | 211 | 308 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.2E-20 | 213 | 311 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 2.15E-15 | 219 | 313 | No hit | No description |
PROSITE profile | PS50863 | 13.69 | 219 | 315 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 3.9E-14 | 219 | 315 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 5.1E-17 | 219 | 304 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 316 aa Download sequence Send to blast |
MACLTQETDD CPTTYSPTTP HFFKIIVNDT SKYNKIKIPT KFVMKYGDGL SNSVVLKVPS 60 GLEWEMELRR YDGEVWFEKG WPDFSHFYSL DFAHWLLFGY EGNSKFLVRI FDRSCTEIDY 120 PLQTPEEEET DEDSISNNSD HDSSDDARDD YEAFSGDDSV QILDEFSPCQ RETKGRSPLP 180 CPRPHKENIT SSGGKAGPSA RAKAKALQMV SSFTSEYPFL KVAMQPTYLQ YCYLSLRSKF 240 VKKHLSKTCD HVFLRRSDGR TWRVKLEQYE TGRCRLLSGW KKFVQENSLA IGDVCVFVLI 300 DNIKPLFNVI FFPTA* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pbr030238.1 |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009339380.1 | 0.0 | PREDICTED: B3 domain-containing transcription factor VRN1-like | ||||
TrEMBL | A0A498HXF0 | 0.0 | A0A498HXF0_MALDO; Uncharacterized protein | ||||
STRING | XP_009339380.1 | 0.0 | (Pyrus x bretschneideri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF98 | 34 | 369 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G49475.1 | 4e-24 | B3 family protein |