PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pbr030136.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
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Family | MYB | ||||||||
Protein Properties | Length: 324aa MW: 35983.3 Da PI: 7.7377 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 58.9 | 1.1e-18 | 15 | 62 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT+eEd +l+ +++++G g+W++ +++ g++R++k+c++rw++yl Pbr030136.1 15 RGPWTPEEDRKLLAYIQLHGHGSWRSLPQKAGLKRCGKSCRLRWRNYL 62 89*********************************************7 PP | |||||||
2 | Myb_DNA-binding | 52.7 | 9.9e-17 | 68 | 113 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+++ Ed+ +++++++lG++ W++Ia++++ +Rt++++k++w+++l Pbr030136.1 68 RGNFSLHEDQTIIQLHALLGNR-WSAIAAHLP-RRTDNEVKNYWNSHL 113 89********************.*********.************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 18.465 | 10 | 62 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 5.1E-24 | 11 | 65 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 6.47E-31 | 12 | 109 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.4E-15 | 14 | 64 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.2E-17 | 15 | 62 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 4.55E-12 | 17 | 62 | No hit | No description |
PROSITE profile | PS51294 | 25.109 | 63 | 117 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 7.8E-26 | 66 | 117 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 3.1E-16 | 67 | 115 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.7E-15 | 68 | 113 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.38E-11 | 70 | 113 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 324 aa Download sequence Send to blast |
MGKSSCHAAA SGIKRGPWTP EEDRKLLAYI QLHGHGSWRS LPQKAGLKRC GKSCRLRWRN 60 YLRPDIKRGN FSLHEDQTII QLHALLGNRW SAIAAHLPRR TDNEVKNYWN SHLKKRLAKI 120 GFDPVTHKPK AAILSSANGD PKNWSNLSHI AQWESARLQA EARSVKESKL RMHESAPAPS 180 LSDDHHQFAP PLVPQCLDIL RASAWESLIS MSRSSSRSAA QTNMNGQGNV SFGDHHHVHD 240 HGINMNAQDY GSNFEAPTSD QQLSSLMGYD DATLMSSVAT GSMDINELFG EYCGDECSEL 300 LAALHHDTGF EFGDAWTSLE QLM* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 2e-26 | 15 | 117 | 7 | 108 | B-MYB |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Functions as a repressor of epidermal cell outgrowth and negatively regulate trichome branch formation (PubMed:18805951, PubMed:21070410). Acts as both a positive and negative regulator of cellular outgrowth. Promotes both trichome expansion and branch formation (PubMed:21070410). Coordinately with WIN1/SHN1, participates in the regulation of cuticle biosynthesis and wax accumulation in reproductive organs and trichomes. Functions in cuticle nanoridge formation in petals and stamens, and in morphogenesis of petal conical cells and trichomes (PubMed:23709630). May play a role in the regulation of cuticle formation in vegetative organs (PubMed:24169067). {ECO:0000269|PubMed:18805951, ECO:0000269|PubMed:21070410, ECO:0000269|PubMed:23709630, ECO:0000269|PubMed:24169067}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pbr030136.1 |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009339145.1 | 0.0 | PREDICTED: myb-related protein Hv1-like | ||||
Swissprot | Q9LE63 | 1e-89 | MY106_ARATH; Transcription factor MYB106 | ||||
TrEMBL | A0A498JMW9 | 0.0 | A0A498JMW9_MALDO; Uncharacterized protein | ||||
STRING | XP_009339145.1 | 0.0 | (Pyrus x bretschneideri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF835 | 34 | 127 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G15310.2 | 9e-90 | myb domain protein 16 |