PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pbr030115.1

Organism

Pyrus bretschneideri

Taxonomic ID

225117

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus

Family

bHLH

Protein Properties

Length: 376aa MW: 41239.5 Da PI: 7.7362

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pbr030115.1	genome	CPETR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	15.1	4.1e-05	207	230	32	55
..TTS-STCHHHHHHHHHHHHHHH CS HLH 32 kapskKlsKaeiLekAveYIksLq 55 +++s++ +Ka++L ++++Y+++Lq Pbr030115.1 207 HNQSERTNKASMLDEVIKYLQQLQ 230 5699*******************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.280.10	2.4E-5	206	238	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	0.0018	207	234	No hit	No description
SuperFamily	SSF47459	1.55E-6	208	253	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 376 aa Download sequence Send to blast
MQQQNQPNAS LLVPLSNYDV IELKLENSQL AMHGLGGLPP TSQSKPAWGR SMACDTLESI 60 VDQATCHKRD PNIIRHDQTP ANISSMVASS GGTWTDSSVQ VPPAQGWIRK HTQSDSGFFE 120 NNFSSKTNSI HEEHADPSSV RLCRDNDTTM STLVSFESPP SLKTKSIEED SACHGGLKNR 180 DDGRETTKGG KPSRSHSTRP RRAAAVHNQS ERTNKASMLD EVIKYLQQLQ AQVQMMHSMR 240 NFMPNGHMNM NMMMPLEIQQ QHLHQMSLLA HMGMGTGTGT RIHPTPVVAA APPSFMPPFM 300 MPPLMQPHPP PQAKPEPTGT NDGSDPLPDP YCSLLAQQSM NMDLFNRMAA LYRLQVTPAT 360 AASSSPSQSS QVRRN*

Sequence ? help Back to Top

Protein Sequence Length: 376 aa Download sequence Send to blast

MQQQNQPNAS LLVPLSNYDV IELKLENSQL AMHGLGGLPP TSQSKPAWGR SMACDTLESI  60
VDQATCHKRD PNIIRHDQTP ANISSMVASS GGTWTDSSVQ VPPAQGWIRK HTQSDSGFFE  120
NNFSSKTNSI HEEHADPSSV RLCRDNDTTM STLVSFESPP SLKTKSIEED SACHGGLKNR  180
DDGRETTKGG KPSRSHSTRP RRAAAVHNQS ERTNKASMLD EVIKYLQQLQ AQVQMMHSMR  240
NFMPNGHMNM NMMMPLEIQQ QHLHQMSLLA HMGMGTGTGT RIHPTPVVAA APPSFMPPFM  300
MPPLMQPHPP PQAKPEPTGT NDGSDPLPDP YCSLLAQQSM NMDLFNRMAA LYRLQVTPAT  360
AASSSPSQSS QVRRN*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pbr030115.1

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009339116.1	0.0	PREDICTED: transcription factor PIF7-like isoform X2
TrEMBL	A0A498JTC9	0.0	A0A498JTC9_MALDO; Uncharacterized protein
STRING	XP_009339115.1	0.0	(Pyrus x bretschneideri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF12999	24	32

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G00050.1	2e-20	bHLH family protein