PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr029989.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family MIKC_MADS
Protein Properties Length: 307aa    MW: 34142.8 Da    PI: 8.8724
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr029989.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF98.23.4e-31959151
                 S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
       SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                 krienk+nrqvtf+kRrng+lKKA+ELSvLCdaeva+i+fs++gklye++s
  Pbr029989.1  9 KRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIVFSTSGKLYEFCS 59
                 79***********************************************96 PP
2K-box77.34e-26165246788
        K-box   7 ksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelq 88 
                   s+++++++s +qe+ kLk ++e Lq +qRh+lGedL  L +keLqqLe+qL+ slkkiRs+K+e+lle    l++k +e+ 
  Pbr029989.1 165 ASQSAEDEQSRYQEYLKLKTKVEALQCTQRHILGEDLVHLGMKELQQLENQLDISLKKIRSTKEEMLLEANTGLRRKLEEIT 246
                  45778899*********************************************************************99875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006633.067161IPR002100Transcription factor, MADS-box
SMARTSM004324.0E-41160IPR002100Transcription factor, MADS-box
SuperFamilySSF554557.33E-30263IPR002100Transcription factor, MADS-box
CDDcd002651.83E-40264No hitNo description
PRINTSPR004041.9E-32323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003191.5E-261057IPR002100Transcription factor, MADS-box
PRINTSPR004041.9E-322338IPR002100Transcription factor, MADS-box
PRINTSPR004041.9E-323859IPR002100Transcription factor, MADS-box
PfamPF014866.2E-20169244IPR002487Transcription factor, K-box
PROSITE profilePS5129712.806172259IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 307 aa     Download sequence    Send to blast
MGRGKVELKR IENKINRQVT FAKRRNGLLK KAYELSVLCD AEVALIVFST SGKLYEFCSG  60
PSIQASFFLH HQPLPTFALL SRRRWSISHP RLLLSSVDHI HISSSDLSSP SIPPTSLPPT  120
YLVNPAPNPS SSFPDATMTT RSGHVQSIAK TLERYQRCTY GELGASQSAE DEQSRYQEYL  180
KLKTKVEALQ CTQRHILGED LVHLGMKELQ QLENQLDISL KKIRSTKEEM LLEANTGLRR  240
KLEEITAGPQ RSWNSNHQAA QLEGFPEHLQ STNALQIGTP VVTNDEANVA TSSAQSGTGF  300
FPGWML*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3mu6_A7e-19259158Myocyte-specific enhancer factor 2A
3mu6_B7e-19259158Myocyte-specific enhancer factor 2A
3mu6_C7e-19259158Myocyte-specific enhancer factor 2A
3mu6_D7e-19259158Myocyte-specific enhancer factor 2A
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr029989.1
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB7451181e-124AB745118.1 Pyrus pyrifolia MADS-box 16 mRNA for transcription factor, complete cds, cultivar: Kosui, clone: PpMADS16-1.
GenBankKP1640121e-124KP164012.1 Pyrus pyrifolia clone PpCMB1 CBM1-like MADS-box protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009356441.11e-109PREDICTED: MADS-box protein CMB1-like isoform X2
TrEMBLL0N0L71e-102L0N0L7_PYRPY; CBM1-like MADS-box protein
STRINGXP_009356441.11e-109(Pyrus x bretschneideri)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G03710.35e-36MIKC_MADS family protein