PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr029986.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family YABBY
Protein Properties Length: 163aa    MW: 17873.7 Da    PI: 9.0213
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr029986.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY128.31.1e-39131564161
        YABBY   4 fssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesastsvssekl 101
                  ++ se++Cyv+CnfCnt+lav +P + l+ ++tv+CGhC++l           l++ s l+ +  ++    l  +   ++   + ++s+s+  ++   
  Pbr029986.1  13 NQPSENLCYVRCNFCNTVLAVGLPCKRLMDTITVKCGHCSNLSF---------LSTRSPLEGQCLPDHPTSLTLQAGCCTDFRKGQSSSSSLSPV--- 98 
                  5789************************************9754.........444455556666666666666666666555555444444444... PP

        YABBY 102 senedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWa 161
                    +++  +p++p v++PPek+ r Psaynrf+k+ei+rika+nP++ hreafsaaakn  
  Pbr029986.1  99 --SSNPPSPKAPFVVKPPEKKHRLPSAYNRFMKDEIKRIKATNPEVPHREAFSAAAKNKV 156
                  ..5567899999**********************************************75 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046901.1E-4915155IPR006780YABBY protein
SuperFamilySSF470953.67E-7100152IPR009071High mobility group box domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010254Biological Processnectary development
GO:0010582Biological Processfloral meristem determinacy
GO:0048479Biological Processstyle development
Sequence ? help Back to Top
Protein Sequence    Length: 163 aa     Download sequence    Send to blast
MSMEEKVTMD FINQPSENLC YVRCNFCNTV LAVGLPCKRL MDTITVKCGH CSNLSFLSTR  60
SPLEGQCLPD HPTSLTLQAG CCTDFRKGQS SSSSLSPVSS NPPSPKAPFV VKPPEKKHRL  120
PSAYNRFMKD EIKRIKATNP EVPHREAFSA AAKNKVGFNL PL*
Functional Description ? help Back to Top
Source Description
UniProtRegulates carpel specification in flower development. Severe or intermediate mutation in DL causes complete or partial homeotic conversion of carpels into stamens without affecting the identities of other floral organs. Interacts antagonistically with class B genes and controls floral meristem determinacy. Regulates midrib formation in leaves probably by inducing cell proliferation in the central region of the leaf. {ECO:0000269|PubMed:14729915}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00220DAPTransfer from AT1G69180Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr029986.1
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB6272501e-130AB627250.1 Malus x domestica mRNA, microsatellite: MEST098, clone: FLW01_10_E08.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008389395.13e-96protein CRABS CLAW isoform X4
SwissprotQ76EJ04e-59YABDL_ORYSJ; Protein DROOPING LEAF
TrEMBLA0A498IBD41e-90A0A498IBD4_MALDO; Uncharacterized protein
STRINGXP_009356541.11e-109(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF102593040
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69180.13e-56YABBY family protein