PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pbr029902.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
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Family | AP2 | ||||||||
Protein Properties | Length: 652aa MW: 72277 Da PI: 7.3 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 51 | 3.7e-16 | 319 | 378 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++gr++A+++d ++ g ++ ++++lg ++ +e+Aa+a++ a++k++g Pbr029902.1 319 SQYRGVTRHRWTGRYEAHLWDnSCKkEGqsRKgRQVYLGGYDMEEKAARAYDLAALKYWG 378 78*******************988886678446*************************98 PP | |||||||
2 | AP2 | 46 | 1.3e-14 | 423 | 472 | 3 | 55 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+GV+++++ grW A+I + +k +lg+f t eeAa+a++ a+ k++g Pbr029902.1 423 YRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 472 9***************988532...5************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 1.24E-16 | 319 | 387 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 6.60E-22 | 319 | 386 | No hit | No description |
Pfam | PF00847 | 6.4E-13 | 319 | 378 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 19.203 | 320 | 386 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 4.9E-29 | 320 | 392 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 4.4E-16 | 320 | 387 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.0E-6 | 321 | 332 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.38E-24 | 421 | 482 | No hit | No description |
SuperFamily | SSF54171 | 1.7E-17 | 421 | 481 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 19.203 | 422 | 480 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 6.0E-33 | 422 | 486 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 6.2E-18 | 422 | 480 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.8E-9 | 423 | 472 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.0E-6 | 462 | 482 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 652 aa Download sequence Send to blast |
MKSMSNDGSN SNSNNNWLDF SLSPNMKIES SSSSVAAAAS FFHSPPHFNY GIYYGLEGGG 60 GGRGEDNSPV LYSPLSMMPL KSDGSLCIME ALNRSQHHLQ AAMVTTTSPT PKLEDFFGGA 120 TMGTHQYESS DREAMALSLD SMFYLQNPHP TTQHHVPSNH QNLMSHSLQQ QQTQQHQQQY 180 SSSYYSGLRT HATILEEGHK QTHVSADYYN MHPARIGIDQ SIAEMKSWVS RNNAMDQNNM 240 AAGCMGENGE LSYGDLQCLS LSMSPGSQSS CVTSSQQISP TVTTDCVTLV DTKKRGLEKV 300 DQKQIVHRKS LDTFGQRTSQ YRGVTRHRWT GRYEAHLWDN SCKKEGQSRK GRQVYLGGYD 360 MEEKAARAYD LAALKYWGPS THINFPLEDY KKELEDMKNM TRQEYVAHLR RKSSGFSRGA 420 SMYRGVTRHH QHGRWQARIG RVAGNKDLYL GTFSTQEEAA EAYDIAAIKF RGLNAVTNFD 480 ITRYDVDQIM SSNTLLASEL AKRNKEVVLV NEATNQNNVT QIGNGEAVVS RKNISEGEDW 540 KMALYQSSSQ QLDQKQPSTE TRNVTQAEAE DFGKMGAAHF SNASSLVTSL GSSREGSPDK 600 SSQPSFFGMP PSASKFFTSS SDAVSSWIPT VQSRPGLTNP HMPIFAAWTD A* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that recognizes and binds to the DNA consensus sequence 5'-CAC[AG]N[AT]TNCCNANG-3'. Required for the initiation and growth of ovules integumenta, and for the development of female gametophyte. Plays a critical role in the development of gynoecium marginal tissues (e.g. stigma, style and septa), and in the fusion of carpels and of medial ridges leading to ovule primordia. Also involved in organs initiation and development, including floral organs. Maintains the meristematic competence of cells and consequently sustains expression of cell cycle regulators during organogenesis, thus controlling the final size of each organ by controlling their cell number. Regulates INO autoinduction and expression pattern. As ANT promotes petal cell identity and mediates down-regulation of AG in flower whorl 2, it functions as a class A homeotic gene. {ECO:0000269|PubMed:10528263, ECO:0000269|PubMed:10639184, ECO:0000269|PubMed:10948255, ECO:0000269|PubMed:11041883, ECO:0000269|PubMed:12183381, ECO:0000269|PubMed:12271029, ECO:0000269|PubMed:12655002, ECO:0000269|PubMed:8742706, ECO:0000269|PubMed:8742707, ECO:0000269|PubMed:9001406, ECO:0000269|PubMed:9093862, ECO:0000269|PubMed:9118807}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pbr029902.1 |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009339164.1 | 0.0 | PREDICTED: AP2-like ethylene-responsive transcription factor ANT | ||||
Swissprot | Q38914 | 1e-169 | ANT_ARATH; AP2-like ethylene-responsive transcription factor ANT | ||||
TrEMBL | A0A498I334 | 0.0 | A0A498I334_MALDO; Uncharacterized protein | ||||
STRING | XP_009339164.1 | 0.0 | (Pyrus x bretschneideri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF916 | 34 | 114 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37750.1 | 1e-134 | AP2 family protein |