PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pbr029895.1

Organism

Pyrus bretschneideri

Taxonomic ID

225117

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus

Family

Protein Properties

Length: 316aa MW: 36249.9 Da PI: 5.7162

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pbr029895.1	genome	CPETR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	44.5	2.8e-14	22	114	1	100
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 ffk+ + +d++k + + +p kf+ ++g s ++l+ +sg +We++ r+++g+++++kGW +F + L+ +vF ++g+s+f +v++f+ Pbr029895.1 22 FFKIIV-NDTSKYNKIKIPTKFVMKYGDG--LSNSVVLKVPSGLEWEMEP--RRYDGEVWFEKGWPDFSHFYSLDFAYWLVFGYEGNSKF--LVRIFD 112 667664.57777888*********755..7778***********..******************************9999..***9 PP SS CS B3 99 ks 100 +s Pbr029895.1 113 RS 114 85 PP
2	B3	60.6	2.6e-19	219	304	1	88
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.S CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.s 88 f+kv +++ +l+ + l+l kf+++h + k+++ + l+ ++gr+W+vkl + gr+ l +GWk+Fv++n L gD++vF l+++ + Pbr029895.1 219 FLKVAMQPTYLQYCYLSLRSKFVKKHLS-KTCD-HVFLRRSDGRTWRVKLE-QYETGRCRLLSGWKKFVQENSLAIGDVCVFVLIDNiK 304 899*********************54.4565.9***********3.33334477889******************998644 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	3.5E-20	15	115	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	3.53E-21	15	115	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	2.73E-15	20	112	No hit	No description
PROSITE profile	PS50863	11.364	21	114	IPR003340	B3 DNA binding domain
Pfam	PF02362	6.5E-11	22	113	IPR003340	B3 DNA binding domain
SMART	SM01019	5.7E-9	22	114	IPR003340	B3 DNA binding domain
Gene3D	G3DSA:2.40.330.10	8.9E-22	211	308	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	1.2E-20	213	311	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	1.41E-15	219	313	No hit	No description
PROSITE profile	PS50863	13.69	219	315	IPR003340	B3 DNA binding domain
Pfam	PF02362	5.1E-17	219	304	IPR003340	B3 DNA binding domain
SMART	SM01019	3.9E-14	219	315	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 316 aa Download sequence Send to blast
MACLTQETDD CPTTYSPTTP HFFKIIVNDT SKYNKIKIPT KFVMKYGDGL SNSVVLKVPS 60 GLEWEMEPRR YDGEVWFEKG WPDFSHFYSL DFAYWLVFGY EGNSKFLVRI FDRSCTEIDY 120 PLQTPEEEET DEDSISNNSD HDSSDDARDD YEAYSGDDSV QILDEFSPCQ RETKGRSPLP 180 CPRPHKENIT SSGGKAGPSA RAKAKALQMV SSFTSEYPFL KVAMQPTYLQ YCYLSLRSKF 240 VKKHLSKTCD HVFLRRSDGR TWRVKLEQYE TGRCRLLSGW KKFVQENSLA IGDVCVFVLI 300 DNIKPLFNVI FFPTA*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pbr029895.1

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009339160.1	0.0	PREDICTED: B3 domain-containing transcription factor VRN1-like isoform X1
TrEMBL	A0A498HXF0	0.0	A0A498HXF0_MALDO; Uncharacterized protein
STRING	XP_009339160.1	0.0	(Pyrus x bretschneideri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF98	34	369

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G18990.1	3e-23	B3 family protein