PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pbr029846.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
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Family | Trihelix | ||||||||
Protein Properties | Length: 342aa MW: 38861.2 Da PI: 5.901 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 69.1 | 8.6e-22 | 39 | 130 | 1 | 83 |
trihelix 1 rWtkqevlaLiearremeerlrrgk.........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfd 83 rWt++e+ +Lie++r +e++++rg+ + +p+W+ vs+++r+rg++r p+qC+++w+nl ++kki+++e + + e++s +++ + Pbr029846.1 39 RWTRHETFVLIEGKRVVENAVQRGQrstsalgaeSFEPKWDLVSSYCRQRGMSRLPVQCRKRWSNLLVDFKKIRNWEAQIEREAESFWVMRN 130 8*********************98666667776699*******************************************9888888887765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 2.2E-4 | 36 | 106 | IPR009057 | Homeodomain-like |
Pfam | PF13837 | 3.2E-11 | 38 | 128 | No hit | No description |
PROSITE profile | PS50090 | 6.737 | 39 | 105 | IPR017877 | Myb-like domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 342 aa Download sequence Send to blast |
MALESMNHEA ASPRPDQADK QQTPNGSSED KTKITRHPRW TRHETFVLIE GKRVVENAVQ 60 RGQRSTSALG AESFEPKWDL VSSYCRQRGM SRLPVQCRKR WSNLLVDFKK IRNWEAQIER 120 EAESFWVMRN DARRERRLPG FFDREVYNVL DGREVTATEA CPLALFMPGQ TDAMDGDGTE 180 EAAAEEEEEE GPEKDLHGGR DDMAEDGLCS DFEESGQDKT VKKSKNENIM QESPTKTVTT 240 PMPNSGAVKE KRSLGSKTPG ENIYQEKWKQ RRVSTDESEH SNNIDQLVKV LERNSNMLSA 300 HLEAHNINCH LEREQRKEQN NSILAALGKV TDVLARIAHK L* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pbr029846.1 |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009339055.1 | 0.0 | PREDICTED: trihelix transcription factor ASR3-like | ||||
TrEMBL | A0A498JJ47 | 0.0 | A0A498JJ47_MALDO; Uncharacterized protein | ||||
STRING | XP_009339055.1 | 0.0 | (Pyrus x bretschneideri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2165 | 33 | 75 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G33550.1 | 9e-76 | Trihelix family protein |