PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pbr029798.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
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Family | GRAS | ||||||||
Protein Properties | Length: 534aa MW: 58796.4 Da PI: 5.0709 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 433.9 | 1.2e-132 | 163 | 533 | 1 | 374 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlta 98 l+e+L +cA+a++++d++ +++l + l++++s +g+p+qRl ay++e+L arla+s+s+++++l+++e + s+e l+++++++ev+P++kf+++ a Pbr029798.1 163 LKEVLCACAKALANNDMSTTEQLFSSLRQMVSVSGEPIQRLGAYILEGLIARLASSGSSICASLRCKEPA---SAELLSYMHILYEVCPYFKFGYMSA 257 5789*****************************************************************9...9************************ PP GRAS 99 NqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeL 194 N aI ea++ e+rvHiiDf++ qG QW++L+qaLa+Rp+gpp++RiTg+++++s + l +g+rL+++Ae+++vpfef++ + ++++le+L Pbr029798.1 258 NGAIAEAMKDESRVHIIDFQVAQGSQWITLIQALATRPGGPPQIRITGIDDSTSAyvRGGGLGVVGQRLSRLAESCKVPFEFHA-AGIFGSEVQLEDL 354 ***************************************************998899999************************.78899******** PP GRAS 195 rvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgr 292 ++pgEa+aVn++l+lh+++desv+++++rd++L+l kslsPkvv++veqe+++n+ +Fl rf+e+l+y+sa+fds+++ lpre++eri+vE+++l+r Pbr029798.1 355 VIRPGEAIAVNFALMLHHIPDESVNSHNHRDRLLRLAKSLSPKVVTLVEQESNTNAVPFLPRFTETLSYFSAVFDSIDVALPREHRERINVEQHCLAR 452 ************************************************************************************************** PP GRAS 293 eivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 eivn++acegaer+er e l+kWr+r+ +aGF+p pls +++++k+ll+ ++++ y++ee g+l+lgW+++pLv+ +aWr Pbr029798.1 453 EIVNIIACEGAERVERYEPLSKWRSRFIMAGFSPCPLSPLVNATIKTLLQSYSEK-YTLEEMGGALYLGWMNQPLVVSCAWR 533 *****************************************************65.*************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 68.17 | 137 | 514 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 4.2E-130 | 163 | 533 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 534 aa Download sequence Send to blast |
MRESHKHIIP NVPRQIGEQP VEEPESSFQN VEQQASSDEV VQGTQLSVQR FEQHCTLESS 60 SGTSGYPGRS SSSSLNFSAN GSPASHPDVH SYHSCGSPVN QSCISNETDD LGHKIRELEN 120 ALLGNDSDAF DAYNIIDEVG ANQIYSEAEN WEQMMMMIRG SDLKEVLCAC AKALANNDMS 180 TTEQLFSSLR QMVSVSGEPI QRLGAYILEG LIARLASSGS SICASLRCKE PASAELLSYM 240 HILYEVCPYF KFGYMSANGA IAEAMKDESR VHIIDFQVAQ GSQWITLIQA LATRPGGPPQ 300 IRITGIDDST SAYVRGGGLG VVGQRLSRLA ESCKVPFEFH AAGIFGSEVQ LEDLVIRPGE 360 AIAVNFALML HHIPDESVNS HNHRDRLLRL AKSLSPKVVT LVEQESNTNA VPFLPRFTET 420 LSYFSAVFDS IDVALPREHR ERINVEQHCL AREIVNIIAC EGAERVERYE PLSKWRSRFI 480 MAGFSPCPLS PLVNATIKTL LQSYSEKYTL EEMGGALYLG WMNQPLVVSC AWR* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5hyz_A | 3e-66 | 167 | 533 | 8 | 375 | GRAS family transcription factor containing protein, expressed |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | May play a regulatory role in the early step of oligosaccharide elicitor response, downstream of the membrane-associated high-affinity chitin-binding protein. {ECO:0000269|PubMed:12591613}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pbr029798.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By oligosaccharide elicitor (N-Acetylchitooligosaccharide) extracted from the rice blast fungus (M.grisea) cell wall. Strongest induction by chitin oligomer with greater degree of polymerization (heptamer). By inoculation of M.grisea in rice cell suspension culture. {ECO:0000269|PubMed:12591613}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009338895.1 | 0.0 | PREDICTED: scarecrow-like protein 21 | ||||
Refseq | XP_009338900.1 | 0.0 | PREDICTED: scarecrow-like protein 21 | ||||
Swissprot | Q8GVE1 | 0.0 | CIGR2_ORYSJ; Chitin-inducible gibberellin-responsive protein 2 | ||||
TrEMBL | A0A498IKQ5 | 0.0 | A0A498IKQ5_MALDO; Uncharacterized protein | ||||
STRING | XP_009338895.1 | 0.0 | (Pyrus x bretschneideri) | ||||
STRING | XP_009338900.1 | 0.0 | (Pyrus x bretschneideri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1653 | 34 | 97 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G48150.2 | 0.0 | GRAS family protein |
Publications ? help Back to Top | |||
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