PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pbr029686.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 243aa MW: 28085.7 Da PI: 10.0062 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 98.6 | 2.6e-31 | 24 | 73 | 1 | 50 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 krien++nrqvtf+kRrng+lKKA+ELSvLCdaeva+i+fs++g+lyey+ Pbr029686.2 24 KRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSTRGRLYEYA 73 79***********************************************8 PP | |||||||
2 | K-box | 110.5 | 1.7e-36 | 92 | 188 | 4 | 100 |
K-box 4 ssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100 ++g s++ea+++ +qqe++kL+++i+++q+++Rh+lGe+L++L++keL++Le +Lek++++iRskKne+l+++ie +qk+e elq++n+ Lr+k++e Pbr029686.2 92 TDGGSVSEANTQFYQQEASKLRRQIREIQNSNRHILGESLSTLKVKELKNLEVRLEKGISRIRSKKNEILFSEIEFMQKRETELQHHNNFLRAKIAE 188 566779****************************************************************************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 2.9E-40 | 16 | 75 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 33.501 | 16 | 76 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 9.49E-44 | 17 | 91 | No hit | No description |
SuperFamily | SSF55455 | 1.44E-32 | 17 | 88 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 8.0E-33 | 18 | 38 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 18 | 72 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.9E-26 | 25 | 72 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 8.0E-33 | 38 | 53 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 8.0E-33 | 53 | 74 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 2.4E-26 | 100 | 186 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 14.556 | 102 | 192 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0048481 | Biological Process | plant ovule development | ||||
GO:0090376 | Biological Process | seed trichome differentiation | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 243 aa Download sequence Send to blast |
MEFPNQAPES STQKKLGRGK IEIKRIENTT NRQVTFCKRR NGLLKKAYEL SVLCDAEVAL 60 IVFSTRGRLY EYANNSIRAT IDRYKKACAD STDGGSVSEA NTQFYQQEAS KLRRQIREIQ 120 NSNRHILGES LSTLKVKELK NLEVRLEKGI SRIRSKKNEI LFSEIEFMQK RETELQHHNN 180 FLRAKIAESE REQQQQHTHM MPGTSYDPSM PSNSYDRNFF PVILESNNNH YPRQGQTALQ 240 LV* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1tqe_P | 5e-20 | 16 | 84 | 1 | 69 | Myocyte-specific enhancer factor 2B |
1tqe_Q | 5e-20 | 16 | 84 | 1 | 69 | Myocyte-specific enhancer factor 2B |
1tqe_R | 5e-20 | 16 | 84 | 1 | 69 | Myocyte-specific enhancer factor 2B |
1tqe_S | 5e-20 | 16 | 84 | 1 | 69 | Myocyte-specific enhancer factor 2B |
5f28_A | 6e-20 | 16 | 84 | 1 | 69 | MEF2C |
5f28_B | 6e-20 | 16 | 84 | 1 | 69 | MEF2C |
5f28_C | 6e-20 | 16 | 84 | 1 | 69 | MEF2C |
5f28_D | 6e-20 | 16 | 84 | 1 | 69 | MEF2C |
6byy_A | 7e-20 | 16 | 84 | 1 | 69 | MEF2 CHIMERA |
6byy_B | 7e-20 | 16 | 84 | 1 | 69 | MEF2 CHIMERA |
6byy_C | 7e-20 | 16 | 84 | 1 | 69 | MEF2 CHIMERA |
6byy_D | 7e-20 | 16 | 84 | 1 | 69 | MEF2 CHIMERA |
6bz1_A | 7e-20 | 16 | 84 | 1 | 69 | MEF2 CHIMERA |
6bz1_B | 7e-20 | 16 | 84 | 1 | 69 | MEF2 CHIMERA |
6c9l_A | 5e-20 | 16 | 84 | 1 | 69 | Myocyte-specific enhancer factor 2B |
6c9l_B | 5e-20 | 16 | 84 | 1 | 69 | Myocyte-specific enhancer factor 2B |
6c9l_C | 5e-20 | 16 | 84 | 1 | 69 | Myocyte-specific enhancer factor 2B |
6c9l_D | 5e-20 | 16 | 84 | 1 | 69 | Myocyte-specific enhancer factor 2B |
6c9l_E | 5e-20 | 16 | 84 | 1 | 69 | Myocyte-specific enhancer factor 2B |
6c9l_F | 5e-20 | 16 | 84 | 1 | 69 | Myocyte-specific enhancer factor 2B |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00093 | SELEX | Transfer from AT3G58780 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pbr029686.2 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AJ251117 | 0.0 | AJ251117.1 Malus domestica mRNA for C-type MADS box protein (mads14 gene). | |||
GenBank | KP164008 | 0.0 | KP164008.1 Pyrus pyrifolia clone PpAG-1 AG MADS-box protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009356654.1 | 0.0 | PREDICTED: floral homeotic protein AGAMOUS-like isoform X1 | ||||
Refseq | XP_009356655.1 | 0.0 | PREDICTED: floral homeotic protein AGAMOUS-like isoform X1 | ||||
Refseq | XP_009356657.1 | 0.0 | PREDICTED: floral homeotic protein AGAMOUS-like isoform X1 | ||||
Refseq | XP_018503021.1 | 0.0 | PREDICTED: floral homeotic protein AGAMOUS-like isoform X1 | ||||
Refseq | XP_018503022.1 | 0.0 | PREDICTED: floral homeotic protein AGAMOUS-like isoform X1 | ||||
Refseq | XP_018503023.1 | 0.0 | PREDICTED: floral homeotic protein AGAMOUS-like isoform X2 | ||||
Swissprot | Q93XH4 | 1e-122 | MADS1_VITVI; Agamous-like MADS-box protein MADS1 | ||||
TrEMBL | A0A0D4ZYU3 | 1e-177 | A0A0D4ZYU3_PYRPY; AG MADS-box protein | ||||
STRING | XP_009356654.1 | 1e-180 | (Pyrus x bretschneideri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF684 | 29 | 102 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G58780.1 | 1e-116 | MIKC_MADS family protein |
Publications ? help Back to Top | |||
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