PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr029607.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family bHLH
Protein Properties Length: 557aa    MW: 61013 Da    PI: 6.9503
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr029607.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH51.81.4e-16353399455
                  HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
          HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                   hn  Er+RRdriN+++  L+el+P++      K +Ka++L +A+eY+ksLq
  Pbr029607.1 353 VHNLSERKRRDRINEKMKALQELIPHS-----NKTDKASMLDEAIEYLKSLQ 399
                  6*************************7.....5******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.49E-20347413IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088818.12349398IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.07E-17352403No hitNo description
Gene3DG3DSA:4.10.280.103.7E-20353407IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.6E-14353399IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.5E-17355404IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009704Biological Processde-etiolation
GO:0010161Biological Processred light signaling pathway
GO:0010244Biological Processresponse to low fluence blue light stimulus by blue low-fluence system
GO:0010600Biological Processregulation of auxin biosynthetic process
GO:0010928Biological Processregulation of auxin mediated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 557 aa     Download sequence    Send to blast
MNSCIPEWNF ESDLPLTNQK KSIGPDHELV ELLWRNGQVV LNSQTHRKPS FNPNDQSRQV  60
QKHDQQSIRS EGLYGNSSNP IQDDDTVSLI HYPLEDSFDK EFCSHFFSEF PSCDPIELDK  120
PIKQFEGEKV VKFDASDTAR LVSNSPRPNG NSSAGVEYAA NPMPPPRYQY INTDQQNQNQ  180
GGVGKIVNFS QFATPGRVSA GSSRGQLGGK ESGNLAQAEV RECSVMTVGS SYVGSNQVLN  240
DLDVSRASSN CDGTTGLSAG HFYDNVHKIM PQSETGKTDT LDPTLTSSSG GSGSSFGRGG  300
NQSNVVNSNK RKGREAADSE CQSEAAELES ASAARSKSAH RSGSTRRSRA AEVHNLSERK  360
RRDRINEKMK ALQELIPHSN KTDKASMLDE AIEYLKSLQM QLQVMWMGSG MAPMMFPGVQ  420
HYISRMGMGM GMGMGPPALP SMQNPMHLPR HPLVDQCMNV APAANQTVMC QPPVLNPIDY  480
HNQMQNPSFQ EQYARLMNFH HMQTMSQPMN MFRFGSQPLQ QNKMMAPNGF SSGPFGGGAA  540
TNDPLSGKMS KSLEST*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1357362ERKRRD
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00606ChIP-seqTransfer from AT2G43010Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr029607.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP6894150.0KP689415.1 Prunus pseudocerasus isolate Unigene5738 bHLH transcription factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009356576.10.0PREDICTED: transcription factor PIF4-like
RefseqXP_009356577.10.0PREDICTED: transcription factor PIF4-like
RefseqXP_009356578.10.0PREDICTED: transcription factor PIF4-like
TrEMBLA0A498JA550.0A0A498JA55_MALDO; Uncharacterized protein
STRINGXP_009356576.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF81462944
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G59060.46e-40phytochrome interacting factor 3-like 6