PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pbr029523.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
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Family | Dof | ||||||||
Protein Properties | Length: 367aa MW: 38917.9 Da PI: 9.0462 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 124.8 | 2.7e-39 | 86 | 146 | 2 | 62 |
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 +e+alkcprC+stntkfCy+nnysl+qPr+fCk+CrryWt+GGalrnvPvGgg+r+nk+s+ Pbr029523.1 86 PEQALKCPRCESTNTKFCYFNNYSLTQPRHFCKTCRRYWTRGGALRNVPVGGGCRRNKRSK 146 5799******************************************************975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 2.0E-34 | 74 | 144 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 1.3E-32 | 88 | 144 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 29.544 | 90 | 144 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 92 | 128 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 367 aa Download sequence Send to blast |
MVFSSIPAYL DPANWQQQPN QHHHLTGSNT NNISNNNIDN NNSHFLPPPP QPPPSNPHGG 60 SGVGGSGSIR PGSMADRARM ANIPLPEQAL KCPRCESTNT KFCYFNNYSL TQPRHFCKTC 120 RRYWTRGGAL RNVPVGGGCR RNKRSKGTSS SASKSPASSS DPPTGSASSS GHANLGLNNN 180 STAGSADNDN MMMSPQIPPL RFMSPFATDM ALNFGMMNNN YGIGDLNGFH QMGSGPGASG 240 GSLFNFQQQT PSFPFMAGLD PTSAGLMFES SGVELTGYNQ VRPRAPSAGM SIPQMASVKT 300 ELESQQQQQE LNLSRQLLGM NNNSGNDQFW SNGGRGGGGA STTTAWTDLS GFNSTSTTSN 360 NINNPL* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 332 | 338 | GGRGGGG |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pbr029523.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009338756.1 | 0.0 | PREDICTED: dof zinc finger protein DOF2.4-like | ||||
TrEMBL | A0A498K4N3 | 0.0 | A0A498K4N3_MALDO; Uncharacterized protein | ||||
STRING | XP_009338756.1 | 0.0 | (Pyrus x bretschneideri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF656 | 34 | 143 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G37590.1 | 8e-49 | DNA binding with one finger 2.4 |