PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pbr029333.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 81aa MW: 8941.99 Da PI: 4.4979 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 41.3 | 1.9e-13 | 38 | 68 | 21 | 51 |
HHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 21 lKKAeELSvLCdaevaviifsstgklyeyss 51 +KKA ELS++C+ e+aviifs+tgkl+++ss Pbr029333.1 38 FKKAGELSIMCESEAAVIIFSQTGKLFDFSS 68 9****************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 0.0024 | 32 | 69 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.0E-8 | 32 | 47 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 3.2E-10 | 38 | 66 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 2.35E-10 | 38 | 73 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 12.979 | 38 | 70 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.0E-8 | 47 | 68 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 81 aa Download sequence Send to blast |
MHGLGRIGEN DEGEDQDQED RLLAGKAGDL LKDEKRDFKK AGELSIMCES EAAVIIFSQT 60 GKLFDFSSSR YQPCTRIFPT * |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pbr029333.1 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KP164997 | 1e-69 | KP164997.1 Malus domestica dormancy-associated MADS-box transcription factor (DAM2) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A498JGW8 | 1e-25 | A0A498JGW8_MALDO; Uncharacterized protein |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G24540.1 | 3e-11 | AGAMOUS-like 24 |