PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr029260.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family C3H
Protein Properties Length: 373aa    MW: 41013.2 Da    PI: 8.1792
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr029260.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH26.21.4e-08137158426
                  ---SGGGGTS--TTTTT-SS-SS CS
      zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                  + C++f++ G+C+ Gd+C FaHg
  Pbr029260.1 137 AACPDFRK-GHCPKGDSCEFAHG 158
                  78******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501036.3885122IPR000571Zinc finger, CCCH-type
SMARTSM003563.7E-6133159IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.75E-5133162IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.324134160IPR000571Zinc finger, CCCH-type
PfamPF006421.7E-6137158IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.0E-6138160IPR000571Zinc finger, CCCH-type
SMARTSM0035612168191IPR000571Zinc finger, CCCH-type
PROSITE profilePS501036.596168192IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 373 aa     Download sequence    Send to blast
MMLGEPTRLH PTLHVPPWDS LDDHVIHTPT SPFSIPIHSG NSNGNASNGG DYSPLSPMFL  60
DSLAALHRYL PSNESDSLAE DPDMPMNPIS CDQFRMFEFK VRRCAHGRSH DWTDCPYAHP  120
GEKARRRDPR KYHYSGAACP DFRKGHCPKG DSCEFAHGVF ECWLHPARYR TQPCKDGLRC  180
NRRVCFFAHT PEQLRVLPGQ SPRTQGSGAL DSYPFGSPPT SILMSPPLSP PSESPPMSPN  240
SPQLGRNSVS KLVASMRNFK LAKMKMNSPP AWGTQMGSGY GSSPRGSAFR PGLCSLPSTP  300
TRTTGRVGPN PVDIWDQPCE EEPAMERVES GRDLRARMYA RLSKENSLGR VGRVDSGTSA  360
PDVGWISDLV SE*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr029260.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009337135.10.0PREDICTED: zinc finger CCCH domain-containing protein 23-like
SwissprotQ9M0G21e-116C3H49_ARATH; Zinc finger CCCH domain-containing protein 49
TrEMBLA0A498J9W70.0A0A498J9W7_MALDO; Uncharacterized protein
STRINGXP_009337135.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20563176
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G19810.11e-113C3H family protein
Publications ? help Back to Top
  1. Dokládal L, et al.
    cDNA Library Screening Identifies Protein Interactors Potentially Involved in Non-Telomeric Roles of Arabidopsis Telomerase.
    Front Plant Sci, 2015. 6: p. 985
    [PMID:26617625]
  2. Min JH, et al.
    Arabidopsis Basic Helix-Loop-Helix 34 (bHLH34) Is Involved in Glucose Signaling through Binding to a GAGA Cis-Element.
    Front Plant Sci, 2017. 8: p. 2100
    [PMID:29321786]