PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr029256.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family TALE
Protein Properties Length: 400aa    MW: 45252 Da    PI: 6.5117
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr029256.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox28.52.7e-093263612055
                  HHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS
     Homeobox  20 eknrypsaeereeLAkklgLterqVkvWFqNrRake 55 
                  +k +yps++e+  LA+++gL+++q+ +WF N+R ++
  Pbr029256.1 326 YKWPYPSESEKVALAESTGLDQKQINNWFINQRKRH 361
                  4679*****************************885 PP
2ELK37.84.2e-13281302122
          ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                  ELK++LlrKYsgyL+sLkqE+s
  Pbr029256.1 281 ELKNHLLRKYSGYLSSLKQELS 302
                  9*******************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012552.3E-20132176IPR005540KNOX1
PfamPF037905.7E-21133175IPR005540KNOX1
SMARTSM012562.9E-28183234IPR005541KNOX2
PfamPF037916.0E-24187232IPR005541KNOX2
PfamPF037892.8E-10281302IPR005539ELK domain
PROSITE profilePS5121311.296281301IPR005539ELK domain
SMARTSM011883.5E-7281302IPR005539ELK domain
PROSITE profilePS5007113.086301364IPR001356Homeobox domain
SuperFamilySSF466898.13E-20302376IPR009057Homeodomain-like
SMARTSM003892.4E-13303368IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.0E-27306367IPR009057Homeodomain-like
CDDcd000867.50E-12313365No hitNo description
PfamPF059201.2E-16321360IPR008422Homeobox KN domain
PROSITE patternPS000270339362IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 400 aa     Download sequence    Send to blast
MEDYNSQMDH ESSGGRGNFL YASPNLGGNY GRAASDHQMG INTFHLQSSG GGGGGGSGDQ  60
CNFQSPGAHP INVKTEATTS QHGHPKFQYN NNNNNHHHLV SSSRGHQPVV HQLQHNLDLQ  120
NDDHSLSSNE VEAIKAKIIA HPQYSNLVEA YMDCQRVGAP SDVVPRLSVA RQEFEARQRS  180
SGTSRETSKD PELDQFMEAY YDMLVKYREE LTRPIQEAMD FMRRIETQLN MLGNNNNAPP  240
LRIFSPSEDK CEGIGSSEDE QENSGGETEV PEIDPRAEDR ELKNHLLRKY SGYLSSLKQE  300
LSKKKKKGKL PKEARQKLLS WWELHYKWPY PSESEKVALA ESTGLDQKQI NNWFINQRKR  360
HWKPSEDMQF MVMDGLHPQN AALYMDGHYT GDVHYRLGP*
Functional Description ? help Back to Top
Source Description
UniProtProbably binds to the DNA sequence 5'-TGAC-3'.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr029256.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankZ719780.0Z71978.1 M.domestica mRNA for kn1-like protein (1759 bp).
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009337133.10.0PREDICTED: homeobox protein knotted-1-like 1
SwissprotO041340.0KNAP1_MALDO; Homeobox protein knotted-1-like 1
TrEMBLA0A498J6X50.0A0A498J6X5_MALDO; Uncharacterized protein
STRINGXP_009337133.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45843246
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G08150.11e-138KNOTTED-like from Arabidopsis thaliana