PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pbr028681.2

Organism

Pyrus bretschneideri

Taxonomic ID

225117

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus

Family

bHLH

Protein Properties

Length: 448aa MW: 49291.9 Da PI: 6.9011

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pbr028681.2	genome	CPETR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	23.8	7.9e-08	351	391	9	54
HHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS HLH 9 ErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 r+RR+ri +++ L++l+P + K++ a++L +A +Y+k L Pbr028681.2 351 ARQRRERISERIRVLQRLVPGgN------KMDTASMLDEAANYLKFL 391 69****************955......**************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	15.015	342	391	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	8.51E-14	348	405	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	6.7E-12	348	397	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.2E-11	350	404	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	4.5E-5	351	391	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 448 aa Download sequence Send to blast
MDGLDWDDGS HITNTSTLLW SNQVHDLEEL LVSNSSSSAF IPIQGLPKVQ TSHAIMNSTE 60 KPSSIGCHQI AHQKNPCGLE SVHVMSTLRA DELCQAPLKV NMTYNLMSSL STSTFMAADH 120 CGNLGKYVQP QANIQSLQDH HVKAKPVTMH SVDSLDCLLS ATNSNTDTSV EDDDGLSMLF 180 SDCRRNLWNF GAGNNSAISS GESENTETVV SQSSSDLYVQ SQGKPNSTKR SHDQSEPKLH 240 GANYSHFGLL QTDYSSTSEG GFRLISDNPS KTKKPRSDNK RPSSSNISFQ QPTSSVSTSS 300 IEEPDPEVIA QMKEMIYRAA AFRPVNLGLE LVERPKRKNV KISSDPQTVA ARQRRERISE 360 RIRVLQRLVP GGNKMDTASM LDEAANYLKF LRLQVKALEN LGQKIESMSN SNIPTTSFAF 420 SFNPSFPMQT HNHVPLQNPN HIHQPHG*

Sequence ? help Back to Top

Protein Sequence Length: 448 aa Download sequence Send to blast

MDGLDWDDGS HITNTSTLLW SNQVHDLEEL LVSNSSSSAF IPIQGLPKVQ TSHAIMNSTE  60
KPSSIGCHQI AHQKNPCGLE SVHVMSTLRA DELCQAPLKV NMTYNLMSSL STSTFMAADH  120
CGNLGKYVQP QANIQSLQDH HVKAKPVTMH SVDSLDCLLS ATNSNTDTSV EDDDGLSMLF  180
SDCRRNLWNF GAGNNSAISS GESENTETVV SQSSSDLYVQ SQGKPNSTKR SHDQSEPKLH  240
GANYSHFGLL QTDYSSTSEG GFRLISDNPS KTKKPRSDNK RPSSSNISFQ QPTSSVSTSS  300
IEEPDPEVIA QMKEMIYRAA AFRPVNLGLE LVERPKRKNV KISSDPQTVA ARQRRERISE  360
RIRVLQRLVP GGNKMDTASM LDEAANYLKF LRLQVKALEN LGQKIESMSN SNIPTTSFAF  420
SFNPSFPMQT HNHVPLQNPN HIHQPHG*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	351	356	RQRRER

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pbr028681.2

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009338143.1	0.0	PREDICTED: transcription factor bHLH87
Swissprot	Q8S3D2	4e-93	BH087_ARATH; Transcription factor bHLH87
TrEMBL	A0A498HDV1	0.0	A0A498HDV1_MALDO; Uncharacterized protein
STRING	XP_009338143.1	0.0	(Pyrus x bretschneideri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4530	32	57

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G21330.1	5e-85	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]