PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr028628.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family HD-ZIP
Protein Properties Length: 790aa    MW: 87765.6 Da    PI: 7.0452
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr028628.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox50.53.4e-161521911756
                  HHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
     Homeobox  17 elFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                  +lF+++++p++++r++L+k+lgL  rqVk+WFqNrR++ k
  Pbr028628.1 152 KLFKESPHPDEKQRQQLSKQLGLAPRQVKFWFQNRRTQIK 191
                  79**********************************9877 PP
2START224.43.4e-703055282206
                  HHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS.......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEEEE CS
        START   2 laeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv......dsgealrasgvvdmvlallveellddkeqWdetla....kaetlevi 85 
                  + ++a++el k+a+a+ep+Wv+s+    e++n+de++++f  +        +s+ea+r++g+v+ +l++lv++++d++ qW+e+++    ka+t++vi
  Pbr028628.1 305 IVNQAMEELKKMATAGEPLWVRSVetgrEILNYDEYIKEFNIEVPgngrpkRSIEASRETGLVFVDLPRLVQSFMDVN-QWKEMFPcmisKAATVDVI 401
                  56789***********************************77544999******************************.******************* PP

                  CTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSX CS
        START  86 ssg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehvdlkgrl 176
                  ++g      ga+qlm+aelq+l+plvp R+++fvR+++ql+ ++w+ivdvS+d  ++   ++s+v+++++pSg++ie+k ngh+kv+wveh +++ ++
  Pbr028628.1 402 NNGegdnrnGAVQLMFAELQMLTPLVPtREVYFVRCCKQLSPEQWAIVDVSIDKVEDTI-DASLVKCRKRPSGCIIEDKTNGHCKVIWVEHLECQRST 498
                  *********************************************************87.9************************************* PP

                  XHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
        START 177 phwllrslvksglaegaktwvatlqrqcek 206
                  ++ ++r +v+sgla+ga++wvatlq qce+
  Pbr028628.1 499 IQTMYRTIVNSGLAFGARHWVATLQLQCER 528
                  ****************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003895.5E-9144197IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.1E-13151187IPR009057Homeodomain-like
PROSITE profilePS5007114.657151193IPR001356Homeobox domain
SuperFamilySSF466893.34E-13151198IPR009057Homeodomain-like
CDDcd000866.85E-13151191No hitNo description
PfamPF000461.6E-13152191IPR001356Homeobox domain
PROSITE patternPS000270168191IPR017970Homeobox, conserved site
PROSITE profilePS5084839.305295531IPR002913START domain
SuperFamilySSF559612.06E-34298528No hitNo description
CDDcd088756.04E-112300527No hitNo description
Gene3DG3DSA:3.30.530.204.0E-5301522IPR023393START-like domain
SMARTSM002342.2E-71304528IPR002913START domain
PfamPF018527.3E-57305528IPR002913START domain
SuperFamilySSF559619.48E-16557777No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 790 aa     Download sequence    Send to blast
MGVDMSNNPP TSRTKDFFAS PALSLSLAGI FRDAGAAASR EVEEGDEGSG GGASAAVGSV  60
RRREDTTEIS SENSGPGRSR SEDEFDGEGE HDEDDVDGDN KNKKKGRARK MNLTEKESMT  120
KMMLMETTRT RRRRGKSTIG TPPSKSEKWK RKLFKESPHP DEKQRQQLSK QLGLAPRQVK  180
FWFQNRRTQI KAIQERHENS LLKGEMEKLR DENKAMREQI NKACCPNCGT ATTSRDATLT  240
TEEQQLRIEN ARLKSEVEKL RAALVKYPPG TSSPSCSAGQ DQENRSSLDF YTGIFGLEES  300
RIMEIVNQAM EELKKMATAG EPLWVRSVET GREILNYDEY IKEFNIEVPG NGRPKRSIEA  360
SRETGLVFVD LPRLVQSFMD VNQWKEMFPC MISKAATVDV INNGEGDNRN GAVQLMFAEL  420
QMLTPLVPTR EVYFVRCCKQ LSPEQWAIVD VSIDKVEDTI DASLVKCRKR PSGCIIEDKT  480
NGHCKVIWVE HLECQRSTIQ TMYRTIVNSG LAFGARHWVA TLQLQCERLV FFMATNVPMK  540
DSTGVATLAG RKSILKLAQR MTASFCRAIG ASSYHTWTKI SSKTGDDIRI ASRKNLNDPG  600
EPLGVILCAV SSVWLPVSPY LLFDFLRDET RRNEWDIMLN GGPAQTIANL SKGQDRGNAV  660
TIQSMKSKEN SMWILQDTCI NSYESMVVYA PVDITGMQSV MTGCDASNIA ILPSGFSILP  720
DGLESRPMVL TSSQEDRSSE GGTLLTAAFQ VLTNSSPTAK LTMESVESVN TLISCTLRNI  780
KTSLQCEDG*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor required for correct morphological development and maturation of trichomes as well as for normal development of seed coat mucilage. Regulates the frequency of trichome initiation and determines trichome spacing. {ECO:0000269|PubMed:11844112}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr028628.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Down-regulated by GEM. {ECO:0000269|PubMed:17450124}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009338062.10.0PREDICTED: homeobox-leucine zipper protein GLABRA 2-like
SwissprotP466070.0HGL2_ARATH; Homeobox-leucine zipper protein GLABRA 2
TrEMBLD9ZJ210.0D9ZJ21_MALDO; HD domain class transcription factor
STRINGXP_009338062.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF47143352
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G79840.10.0HD-ZIP family protein
Publications ? help Back to Top
  1. Wu R,Citovsky V
    Adaptor proteins GIR1 and GIR2. I. Interaction with the repressor GLABRA2 and regulation of root hair development.
    Biochem. Biophys. Res. Commun., 2017. 488(3): p. 547-553
    [PMID:28526410]