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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Pbr028082.4 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
|
| Family |
BBR-BPC |
| Protein Properties |
Length: 359aa MW: 40388.7 Da PI: 9.7541 |
| Description |
BBR-BPC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Pbr028082.4 | genome | CPETR | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | GAGA_bind | 380.8 | 2.3e-116 | 1 | 358 | 1 | 301 |
GAGA_bind 1 mdddgsre..rnkg.yyepa..aslkenl..glqlmssiaerdakirernlalsekkaavaerd...................maflqrdkalaernk 72
mdd g+re r+k+ +y+ a + l +n+ +q+m++++erda+i+ernla+sekkaa+aerd maflqrd+a+aern
Pbr028082.4 1 MDDGGHREngRHKAdQYKAAqgQWLMHNQpsMKQVMAIMSERDAAIQERNLAFSEKKAALAERDmafxxxxxxxxxxxxxxxxMAFLQRDAAIAERNS 98
9*****999*****99*9554444444432146***************************************************************** PP
GAGA_bind 73 alverdnkllalllvensla....salpvgvqvlsgtksidslqqlse....pqledsavelreeeklealpieeaaeeakekkkkkkrqrakkpkek 162
a++erd+++++l +++nsl+ s++p+g+q+++g+k+++++qq+++ p+++++++++r+++++++ + ++++ ++ ++++k+p+e+
Pbr028082.4 99 AIMERDSAIATLHYRDNSLNsgngSSCPPGCQISRGVKHMHHMQQQQHvhhmPHMNEPTYGTRDMHTSDSITMPPETSVPTK------SRQPKRPREP 190
******************9999999*******************987778899*************8887765544333333......3455566666 PP
GAGA_bind 163 kakkkkkksekskkkvkkesader.............................skaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWq 231
k+++++kk++ks +k k+es+d + sk+++k +dl+ln+v++Dest+P+P+CsCt lrqCYkWGnGGWq
Pbr028082.4 191 KTTQPNKKPSKSPRKMKRESEDLNkmtfdklhdwkggqdmggegddlnkqvvvSKSDWKGQDLGLNQVAYDESTMPAPMCSCTSLLRQCYKWGNGGWQ 288
666666666666666666666633467777889***************************************************************** PP
GAGA_bind 232 SaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkklLekLaaeGydlsnpvDLkdhWAkHGtnkfvtir 301
S+CCttt+S+yPLP+++++r+aR++grKmS++af+klL++L+aeG+dls pvDLkdhWAkHGtn+++ti+
Pbr028082.4 289 SSCCTTTMSMYPLPAVPNKRHARVGGRKMSGSAFNKLLSRLTAEGHDLSSPVDLKDHWAKHGTNRYITIK 358
*********************************************************************8 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 359 aa
Download sequence Send
to blast |
MDDGGHRENG RHKADQYKAA QGQWLMHNQP SMKQVMAIMS ERDAAIQERN LAFSEKKAAL 60
AERDMAFXXX XXXXXXXXXX XXXMAFLQRD AAIAERNSAI MERDSAIATL HYRDNSLNSG 120
NGSSCPPGCQ ISRGVKHMHH MQQQQHVHHM PHMNEPTYGT RDMHTSDSIT MPPETSVPTK 180
SRQPKRPREP KTTQPNKKPS KSPRKMKRES EDLNKMTFDK LHDWKGGQDM GGEGDDLNKQ 240
VVVSKSDWKG QDLGLNQVAY DESTMPAPMC SCTSLLRQCY KWGNGGWQSS CCTTTMSMYP 300
LPAVPNKRHA RVGGRKMSGS AFNKLLSRLT AEGHDLSSPV DLKDHWAKHG TNRYITIK*
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| Functional Description ? help
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| Source |
Description |
| UniProt | Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000269|PubMed:14731261}. |
