PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pbr027978.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
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Family | C2H2 | ||||||||
Protein Properties | Length: 166aa MW: 17499.4 Da PI: 10.1435 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 11.5 | 0.0009 | 139 | 162 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt.H 23 ++C+ C+ksF++ L +H + H Pbr027978.1 139 HSCKPCNKSFNSDGALSSHKKAkH 162 68999**************99877 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50157 | 11.427 | 139 | 165 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF12874 | 2.3E-4 | 140 | 160 | No hit | No description |
PROSITE pattern | PS00028 | 0 | 141 | 162 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 166 aa Download sequence Send to blast |
MRRTILVFTD SEEDLPLNFT DNGKVVAAKP APPKTNAVKP ESSGKQKDML GADSSDEDDD 60 NSEEEEETPT PKKNSKKRPN ESAPKTPVSA KKAKQVTPQK TDGKKGAHTA TPHPAKGGKT 120 PATSDKSKPQ TPKSAGGDHS CKPCNKSFNS DGALSSHKKA KHSAK* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Mediates the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pbr027978.1 |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009337401.1 | 2e-80 | PREDICTED: histone deacetylase HDT1-like isoform X1 | ||||
Swissprot | Q8LJS2 | 1e-26 | HDT1_SOYBN; Histone deacetylase HDT1 | ||||
TrEMBL | A0A498IIY6 | 1e-80 | A0A498IIY6_MALDO; Uncharacterized protein | ||||
STRING | XP_009337401.1 | 6e-80 | (Pyrus x bretschneideri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1025 | 30 | 67 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G03740.1 | 9e-13 | histone deacetylase 2C |