PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pbr027898.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
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Family | B3 | ||||||||
Protein Properties | Length: 249aa MW: 27657.2 Da PI: 10.034 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 52.7 | 7.7e-17 | 11 | 98 | 1 | 97 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 ffk l ++ + +++p +f + + +++++ k+ ++e+ + sWev + r + g+ ++++GW+eFvk+++Lk+g+f+vFk+ gr+ f +v v+ Pbr027898.1 11 FFKPL--IPGFEYA-ISIPASFSQ-N-LNERNAKKAVIESCQ-GSWEVVV-ARTGEGTLYFEGGWEEFVKDHNLKVGEFLVFKHLGRMVF--HVNVY 98 55666..4456665.99*****84.4.445566677777755.59*****.35555559***************************9999..66664 PP | |||||||
2 | B3 | 36.6 | 8.2e-12 | 136 | 219 | 11 | 87 |
HHTT-EE--HHH.HTT---..--SEEEEEETTS.-EEEEEE...EEETTE..EEE-.......TTHHHHHHHHT--TT-EEEEEE-SS CS B3 11 lksgrlvlpkkfaeehggkkeesktltledesg.rsWevkl.iyrkksgr..yvlt.......kGWkeFvkangLkegDfvvFkldgr 87 +++ +++p f+++hg+ ++ +++l+ + +W v+l ++++++++ + + +GW +F ++ngLk gD + F l++ Pbr027898.1 136 PNKCYVTIPSGFVKAHGLGDRK--KMILKVPFVrGKWPVELgTWQGGKRGaaI--SlrtairtRGWYKFYEDNGLKIGDCCKFVLKEV 219 345999**********888555..677777544379*****556555555563..33355666********************98754 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50863 | 12.323 | 8 | 101 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 5.7E-20 | 9 | 101 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 3.53E-18 | 9 | 107 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.45E-16 | 9 | 98 | No hit | No description |
SMART | SM01019 | 4.6E-16 | 11 | 101 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 2.1E-13 | 22 | 95 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 9.3E-14 | 118 | 218 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 7.65E-15 | 119 | 217 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 2.57E-10 | 124 | 218 | No hit | No description |
SMART | SM01019 | 4.2E-4 | 125 | 234 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 9.389 | 126 | 234 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 3.0E-9 | 134 | 219 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009409 | Biological Process | response to cold | ||||
GO:0009941 | Cellular Component | chloroplast envelope | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 249 aa Download sequence Send to blast |
MAGSPPFPRR FFKPLIPGFE YAISIPASFS QNLNERNAKK AVIESCQGSW EVVVARTGEG 60 TLYFEGGWEE FVKDHNLKVG EFLVFKHLGR MVFHVNVYEP LGCEKVFPPS PPPAAAPSTS 120 SPLFFLKSIS ETHSLPNKCY VTIPSGFVKA HGLGDRKKMI LKVPFVRGKW PVELGTWQGG 180 KRGAAISLRT AIRTRGWYKF YEDNGLKIGD CCKFVLKEVP DSKSKPVIME VDIKRMVLGS 240 SKAVVNFE* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pbr027898.1 |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018502884.1 | 0.0 | PREDICTED: B3 domain-containing protein REM9 | ||||
STRING | XP_009355809.1 | 0.0 | (Pyrus x bretschneideri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF14574 | 9 | 17 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G31690.1 | 2e-23 | B3 family protein |