PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr027897.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family TALE
Protein Properties Length: 455aa    MW: 50684.4 Da    PI: 6.6931
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr027897.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox23.31.1e-073844172154
                  HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
     Homeobox  21 knrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                  k +yp++e++++L +++gL+ +q+ +WF N+R +
  Pbr027897.1 384 KWPYPTEEDKARLVQETGLQLKQINNWFINQRKR 417
                  469*****************************87 PP
2ELK29.91.3e-10338359122
          ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                  ELKh+L+++Y+++++++++E++
  Pbr027897.1 338 ELKHELKQGYKEKIVDIREEIM 359
                  9********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012553.5E-18173217IPR005540KNOX1
PfamPF037902.1E-16176216IPR005540KNOX1
SMARTSM012562.2E-26226281IPR005541KNOX2
PfamPF037911.0E-19230280IPR005541KNOX2
PROSITE profilePS512139.969338358IPR005539ELK domain
SMARTSM011881.8E-4338359IPR005539ELK domain
PfamPF037894.2E-7338359IPR005539ELK domain
PROSITE profilePS5007111.888358421IPR001356Homeobox domain
SMARTSM003894.7E-11360425IPR001356Homeobox domain
SuperFamilySSF466894.28E-16360423IPR009057Homeodomain-like
CDDcd000867.28E-12361422No hitNo description
Gene3DG3DSA:1.10.10.604.9E-25365422IPR009057Homeodomain-like
PfamPF059201.3E-17378417IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009416Biological Processresponse to light stimulus
GO:0009722Biological Processdetection of cytokinin stimulus
GO:0071345Biological Processcellular response to cytokine stimulus
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 455 aa     Download sequence    Send to blast
MAYHNHLSQP LHHFTDQTQQ QHQQYQSDQT DPTSKPPEPH HPFQPAPNWL HSALLRNFTN  60
ADTNPTNTNN ANNNGGGSSN FLNLHVTASD SVASQASNQW LSQSHRPILH RNHSDVIDDV  120
TVAGDSMIAA MSHDSADLKP DSNLNKSDGG VVESGIPGGG GGGDGGVINW QNARHKAEIL  180
AHPLYEPLLS AHVACLRIAT PVDQLPRIDA QLAQSQNVVA KYSALGNGMV GDDKELEQFM  240
RHYVLLLCSF KEQLQQHVRV HAMEAVMACW EIEQSLQSLT GVSPGEGTGA TMSDDEDDQV  300
DSDANLFDGS MEGHDSMGFG PLIPTESERS LMERVRQELK HELKQGYKEK IVDIREEIMR  360
KRRAGKLPGD TTSVLKAWWQ SHSKWPYPTE EDKARLVQET GLQLKQINNW FINQRKRNWH  420
SNPSTSTVLK SKRKRCDYKP NMSRYSTGML KGCR*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1414434RKRNWHSNPSTSTVLKSKRKR
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr027897.1
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ7867550.0DQ786755.1 Prunus persica class II knotted-like homeobox protein (Knope3L) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009355804.10.0PREDICTED: homeobox protein knotted-1-like 3 isoform X1
SwissprotO041360.0KNAP3_MALDO; Homeobox protein knotted-1-like 3
TrEMBLA0A498HU080.0A0A498HU08_MALDO; Uncharacterized protein
STRINGXP_009355804.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF101734108
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25220.21e-180KNOTTED1-like homeobox gene 3