PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr027610.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family Trihelix
Protein Properties Length: 567aa    MW: 65145.3 Da    PI: 6.0541
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr027610.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix94.97.5e-30114199187
     trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                  rW++qe+l+L+e+r+ ++++++++++k+plW+evs+ m +e+gf+rs k+Ckek+enl k+ykk+keg+++r  ++ +++++f+qlea
  Pbr027610.1 114 RWPRQETLTLLEIRSALDSKFKETNQKGPLWDEVSRIMaEEHGFQRSGKKCKEKFENLYKYYKKTKEGKSGR--QDGKHYRFFRQLEA 199
                  8*************************************999*****************************98..55667*******85 PP
2trihelix66.74.6e-21414500185
     trihelix   1 rWtkqevlaLiearremeerlrrgk..lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdql 85 
                  rWt++ev  Li++r++ e ++++++  ++++ W+e+++km + g++rs  +Ckekwen++  ++ ++e++k +++e++++  yf+q+
  Pbr027610.1 414 RWTEHEVASLIQLRTSSELTSQESEylKEEGVWKEIAAKMGSLGYTRSGGECKEKWENISVCFRMTTEWNKMHKQETKTNNMYFSQM 500
                  8*********************9877699********************************************999999999****9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.911107172IPR017877Myb-like domain
SMARTSM007170.64111174IPR001005SANT/Myb domain
PfamPF138371.5E-20113200No hitNo description
CDDcd122034.65E-21113179No hitNo description
PROSITE profilePS500907.584407473IPR017877Myb-like domain
SMARTSM007170.0046411475IPR001005SANT/Myb domain
CDDcd122039.83E-17413480No hitNo description
Gene3DG3DSA:1.10.10.601.6E-5414471IPR009057Homeodomain-like
PfamPF138371.5E-14414500No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009909Biological Processregulation of flower development
GO:0010200Biological Processresponse to chitin
GO:0046621Biological Processnegative regulation of organ growth
GO:0048442Biological Processsepal development
GO:0048498Biological Processestablishment of petal orientation
GO:0090428Biological Processperianth development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 567 aa     Download sequence    Send to blast
MDDYGPPDLR HLMASKTQFC KPLQFPEQFS VHHNLTPPPP PPPHYHHHPI LVGSEIVAAA  60
GLLDHHRYTS MITTTACHPS ITISSNTSAA AAIYGIELEH GWNNIDGANN NNSRWPRQET  120
LTLLEIRSAL DSKFKETNQK GPLWDEVSRI MAEEHGFQRS GKKCKEKFEN LYKYYKKTKE  180
GKSGRQDGKH YRFFRQLEAI YGDHHQSSNQ SSIYGRSNPL LCHPTPSGSF DRDQNQEEVV  240
VQDQKIISCE SLSSNNSTEF DQNPPSENID DNESLSAIDY FMMKQSMESL KNENKSYATQ  300
VKKKWKAKVE EFVSSQMGKV IKTQEELMEK MVKSIEDSAD ERIAKEEEWR KQEAAMHERE  360
VHEFWAKERA WVETRDAAIM EALSKYTGQG AYNNNGKDDI AKETGNDNRK NYPRWTEHEV  420
ASLIQLRTSS ELTSQESEYL KEEGVWKEIA AKMGSLGYTR SGGECKEKWE NISVCFRMTT  480
EWNKMHKQET KTNNMYFSQM SCYEEGQEVW NQRQDGMGVQ QMDEGLSPLC SNMDVNSSSL  540
HIPFNGGENL WDERYSHATN SPRDNR*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr027610.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009336990.10.0PREDICTED: trihelix transcription factor PTL-like
TrEMBLA0A498JBB50.0A0A498JBB5_MALDO; Uncharacterized protein
STRINGXP_009336990.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20223489
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03680.14e-90Trihelix family protein