PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pbr027564.1

Organism

Pyrus bretschneideri

Taxonomic ID

225117

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus

Family

bHLH

Protein Properties

Length: 379aa MW: 40941.6 Da PI: 6.8962

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pbr027564.1	genome	CPETR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	11.7	0.00048	240	278	12	55
HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 R +++ +++ L +l+ + +K + a++L +A+ YI+ Lq Pbr027564.1 240 RKEKLGDRITALHQLVSPF-----GKTDTASVLLEAIGYIRFLQ 278 6678889999999999998.....8******************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	11.681	228	277	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	5.23E-10	238	288	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	7.64E-6	238	282	No hit	No description
Gene3D	G3DSA:4.10.280.10	3.4E-7	242	284	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 379 aa Download sequence Send to blast
MNRGGCQSSP VQQMMAGNPN WWSINSMRPP STQPSMNISP FFHPPSPLPP NFLIPQFAPN 60 NNNNTSPPSS TISSSGLGIP SWHIENNNQE LPESWSQLLL GGLVGEDEKG VIMRQFHQAA 120 KKLENWEEQV LNSTQTPNAP AVDVKQENSG SSGGFMYGHH HHGNDHIQDF NPSAAALSSL 180 SQIMQSTTPS AASSPKSSCV TSFSNNNMLD FSSKSECNNG GALKRARVQP SSTPTTFKVR 240 KEKLGDRITA LHQLVSPFGK TDTASVLLEA IGYIRFLQSQ IEALSLPYLG SGSGNMRQQP 300 QSAVHGERNC MFPEDPGQLL NDNCMKRKGA SEQDPHEEPK KDLRSRGLCL VPVSCTLQVG 360 SDNGADYWAP ALSGGGFQ*

Sequence ? help Back to Top

Protein Sequence Length: 379 aa Download sequence Send to blast

MNRGGCQSSP VQQMMAGNPN WWSINSMRPP STQPSMNISP FFHPPSPLPP NFLIPQFAPN  60
NNNNTSPPSS TISSSGLGIP SWHIENNNQE LPESWSQLLL GGLVGEDEKG VIMRQFHQAA  120
KKLENWEEQV LNSTQTPNAP AVDVKQENSG SSGGFMYGHH HHGNDHIQDF NPSAAALSSL  180
SQIMQSTTPS AASSPKSSCV TSFSNNNMLD FSSKSECNNG GALKRARVQP SSTPTTFKVR  240
KEKLGDRITA LHQLVSPFGK TDTASVLLEA IGYIRFLQSQ IEALSLPYLG SGSGNMRQQP  300
QSAVHGERNC MFPEDPGQLL NDNCMKRKGA SEQDPHEEPK KDLRSRGLCL VPVSCTLQVG  360
SDNGADYWAP ALSGGGFQ*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pbr027564.1

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009336860.1	0.0	PREDICTED: transcription factor bHLH68-like isoform X1
Swissprot	Q8S3D1	3e-91	BH068_ARATH; Transcription factor bHLH68
TrEMBL	A0A498KEB5	0.0	A0A498KEB5_MALDO; Uncharacterized protein
STRING	XP_009336860.1	0.0	(Pyrus x bretschneideri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1223	33	79

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G29100.1	2e-86	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Le Hir R, et al. AtbHLH68 transcription factor contributes to the regulation of ABA homeostasis and drought stress tolerance in Arabidopsis thaliana. Physiol Plant, 2017. 160(3): p. 312-327 [PMID:28369972] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470]