PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr027532.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family C3H
Protein Properties Length: 540aa    MW: 61123.5 Da    PI: 9.5641
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr027532.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH20.39.8e-07481500525
                  --SGGGGTS--TTTTT-SS-S CS
      zf-CCCH   5 lCrffartGtCkyGdrCkFaH 25 
                   Cr++a+ G C yG+rCkF+H
  Pbr027532.1 481 MCRHYAQ-GRCYYGERCKFSH 500
                  6******.************* PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF689061.23E-696142No hitNo description
Gene3DG3DSA:1.10.720.304.2E-896142IPR003034SAP domain
PfamPF020373.9E-9107141IPR003034SAP domain
PROSITE profilePS508009.966107141IPR003034SAP domain
SMARTSM005132.4E-4107141IPR003034SAP domain
PROSITE profilePS5010315.676476503IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.88E-6478501IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.2E-7478505IPR000571Zinc finger, CCCH-type
PROSITE profilePS501036.352516527IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 540 aa     Download sequence    Send to blast
MAAPEESKNR RYEEKDEDLW EIGESESDPE YDSDESMKDP TYSTLEETHA KFSNLSIKGK  60
SKARIVKDND VGSEAEVDGQ EVVVPELDEK DRQSFENVQK IIEARQIEKL KVEQCKLYLR  120
KNGLRLTGNK NTLIRRIKEH LEILNGGGEK KYPASTFVLN CKGDACTGDV VMFEQNVYEM  180
FDIASRSGRG PPCGTRIVAG RIVKESYGAA KQQHTFTIEV LWSKGETPLP PLHPLLIKGR  240
NLYRLKTLRQ KWEDEGERQK VLMEKHSRGS LARSDREARV QEKEIRKVLK TNRVSRKGGP  300
KKNKPQLNST SVLKSSLQPQ QSVSLVNSAN LHQPVGISVG SGNMKAGAQQ LGLFSHSAKP  360
ATQPHQSEFT AYSQKPATGP PAISSGFFVD SRKVTYQPQL RRNTTMQDRY FNQASQNLDA  420
STNPSNIQRV YNRTGEALVN IYDNKSNAYT VQGISFQGHQ RQPLASVNHI LPTSRQGQKQ  480
MCRHYAQGRC YYGERCKFSH ENEVREERWS QQQSYYGERC KFSHENSEGR EVASAPKEF*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr027532.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009336698.10.0PREDICTED: zinc finger CCCH domain-containing protein 62-like
RefseqXP_009336708.10.0PREDICTED: zinc finger CCCH domain-containing protein 62-like
TrEMBLA0A498J2R90.0A0A498J2R9_MALDO; Uncharacterized protein
STRINGXP_009336688.10.0(Pyrus x bretschneideri)
STRINGXP_009336698.10.0(Pyrus x bretschneideri)
STRINGXP_009336708.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF116522224