PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pbr027518.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
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Family | C3H | ||||||||
Protein Properties | Length: 540aa MW: 61123.5 Da PI: 9.5641 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 20.3 | 9.8e-07 | 481 | 500 | 5 | 25 |
--SGGGGTS--TTTTT-SS-S CS zf-CCCH 5 lCrffartGtCkyGdrCkFaH 25 Cr++a+ G C yG+rCkF+H Pbr027518.1 481 MCRHYAQ-GRCYYGERCKFSH 500 6******.************* PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF68906 | 1.23E-6 | 96 | 142 | No hit | No description |
Gene3D | G3DSA:1.10.720.30 | 4.2E-8 | 96 | 142 | IPR003034 | SAP domain |
Pfam | PF02037 | 3.9E-9 | 107 | 141 | IPR003034 | SAP domain |
PROSITE profile | PS50800 | 9.966 | 107 | 141 | IPR003034 | SAP domain |
SMART | SM00513 | 2.4E-4 | 107 | 141 | IPR003034 | SAP domain |
PROSITE profile | PS50103 | 15.676 | 476 | 503 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 2.88E-6 | 478 | 501 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.2E-7 | 478 | 505 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 6.352 | 516 | 527 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 540 aa Download sequence Send to blast |
MAAPEESKNR RYEEKDEDLW EIGESESDPE YDSDESMKDP TYSTLEETHA KFSNLSIKGK 60 SKARIVKDND VGSEAEVDGQ EVVVPELDEK DRQSFENVQK IIEARQIEKL KVEQCKLYLR 120 KNGLRLTGNK NTLIRRIKEH LEILNGGGEK KYPASTFVLN CKGDACTGDV VMFEQNVYEM 180 FDIASRSGRG PPCGTRIVAG RIVKESYGAA KQQHTFTIEV LWSKGETPLP PLHPLLIKGR 240 NLYRLKTLRQ KWEDEGERQK VLMEKHSRGS LARSDREARV QEKEIRKVLK TNRVSRKGGP 300 KKNKPQLNST SVLKSSLQPQ QSVSLVNSAN LHQPVGISVG SGNMKAGAQQ LGLFSHSAKP 360 ATQPHQSEFT AYSQKPATGP PAISSGFFVD SRKVTYQPQL RRNTTMQDRY FNQASQNLDA 420 STNPSNIQRV YNRTGEALVN IYDNKSNAYT VQGISFQGHQ RQPLASVNHI LPTSRQGQKQ 480 MCRHYAQGRC YYGERCKFSH ENEVREERWS QQQSYYGERC KFSHENSEGR EVASAPKEF* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pbr027518.1 |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009336698.1 | 0.0 | PREDICTED: zinc finger CCCH domain-containing protein 62-like | ||||
Refseq | XP_009336708.1 | 0.0 | PREDICTED: zinc finger CCCH domain-containing protein 62-like | ||||
TrEMBL | A0A498J2R9 | 0.0 | A0A498J2R9_MALDO; Uncharacterized protein | ||||
STRING | XP_009336688.1 | 0.0 | (Pyrus x bretschneideri) | ||||
STRING | XP_009336698.1 | 0.0 | (Pyrus x bretschneideri) | ||||
STRING | XP_009336708.1 | 0.0 | (Pyrus x bretschneideri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF11652 | 22 | 24 |