PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pbr027488.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
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Family | TCP | ||||||||
Protein Properties | Length: 478aa MW: 52905.6 Da PI: 9.4741 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 141.9 | 4.8e-44 | 160 | 305 | 2 | 130 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt................ssssaseceaesssssas 83 gkkdrhski+T++g+RdRR+Rls+++a++fFdLqd+LGfdk+sktieWL++++k+aik+l + + ++++s++ Pbr027488.1 160 SGKKDRHSKIYTAQGPRDRRMRLSLQIARKFFDLQDMLGFDKASKTIEWLFTKSKTAIKDLKQHllvspkedysstnggaT----------AKVNSSE 247 69**************************************************************99886554433222110..........1111111 PP TCP 84 nsssg..............kaaksaakskksqksaasalnlak.esrakarararertrekm 130 + +aak + + ++++++ +l++ + esr +arararertrek Pbr027488.1 248 ----SttgdvaskimepysSAAKGDISVGLAREKKNRKLSVVArESRMEARARARERTREKL 305 ....0112344566678756666666666666666666666555****************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 2.6E-41 | 161 | 305 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 37.183 | 162 | 220 | IPR017887 | Transcription factor TCP subgroup |
PROSITE profile | PS51370 | 10.67 | 287 | 304 | IPR017888 | CYC/TB1, R domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:2000032 | Biological Process | regulation of secondary shoot formation | ||||
GO:0005634 | Cellular Component | nucleus |
Sequence ? help Back to Top |
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Protein Sequence Length: 478 aa Download sequence Send to blast |
MFPSSSTTSN SQLPFLCDDS HTNGIIDDFH QNPNSISSHG GHHQYYSQYY YSDDQQQQQA 60 PDFLEHDGML LSYLLSQQQL LIDNSSTTNV ATHSNHIRAH SSAKISIVDS NSNKTMELIN 120 HADQITVIPA ADSQIKKNNV KMNGEGGGEK KAKFARKRAS GKKDRHSKIY TAQGPRDRRM 180 RLSLQIARKF FDLQDMLGFD KASKTIEWLF TKSKTAIKDL KQHLLVSPKE DYSSTNGGAT 240 AKVNSSESTT GDVASKIMEP YSSAAKGDIS VGLAREKKNR KLSVVARESR MEARARARER 300 TREKLMRIRG FDQDHQSTKQ SHKHQEQQNP NELFETAGMM NSMMMSMNRP NDGQKIVGRT 360 SSSCGGAESS FLNFAFSQHA EASGANSEDC DFPGNWGAIN NTKNIITGNV LQVVQNPTSY 420 PKQQNPSSIF GTGTQEQNPN SIFLNTLAKA QDQNSTTSSN FEINSNISTL QPLFTGN* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pbr027488.1 |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009336654.1 | 0.0 | PREDICTED: transcription factor TCP18 | ||||
TrEMBL | A0A498I7Y3 | 0.0 | A0A498I7Y3_MALDO; Uncharacterized protein | ||||
STRING | XP_009336654.1 | 0.0 | (Pyrus x bretschneideri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1738 | 32 | 94 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G68800.1 | 6e-31 | TCP domain protein 12 |