PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr027487.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family bHLH
Protein Properties Length: 350aa    MW: 38735.6 Da    PI: 6.8347
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr027487.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH44.82.2e-14156202354
                  HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
          HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                  ++h+e+ErrRR+riN+ +++Lr+llP+      +K +Ka+ L ++++++k+L
  Pbr027487.1 156 KSHSEAERRRRERINNHLAKLRSLLPST-----TKTDKASLLAEVIQHVKEL 202
                  79*************************9.....8****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088816.907153202IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000108.5E-12156202IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.2E-14157211IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474598.9E-15157211IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.3E-13159208IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.64E-5166205No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 350 aa     Download sequence    Send to blast
MMCGKKEDQG ECSQSVQNLQ AFQEHLFLQQ QQHHQMQQQQ GLIFPHDHQP PPPILQPWTL  60
PPNHTFNPTA HDPFLLSTPP PIPSSSSYAS FFNRRGPSLQ LTYDGSASDH HHHLRILSET  120
LGPMVQPGSA PFGLQAELGK LTAQEIMDAK ALAASKSHSE AERRRRERIN NHLAKLRSLL  180
PSTTKTDKAS LLAEVIQHVK ELKRQTSLIS ETSPVPTETD ELIVDDESDE DGKFVIKASL  240
CCEDRSDLLP DLIKTLKALR LRTLKAEITT LGGRVKNVLF ITGEEDSSNS GGEQVQMPHQ  300
QYCKSSIQEA LKAVMEKTAG GSGDQDQSSS GSAKRQRTNN INILEHRSL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1161166ERRRRE
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr027487.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP6894070.0KP689407.1 Prunus pseudocerasus isolate Unigene10252 bHLH transcription factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009336630.10.0PREDICTED: transcription factor bHLH30
SwissprotQ9S7Y11e-111BH030_ARATH; Transcription factor bHLH30
TrEMBLA0A498I8U90.0A0A498I8U9_MALDO; Uncharacterized protein
STRINGXP_009336630.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45893458
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68810.13e-89bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ohashi-Ito K, et al.
    A bHLH complex activates vascular cell division via cytokinin action in root apical meristem.
    Curr. Biol., 2014. 24(17): p. 2053-8
    [PMID:25131670]
  3. Katayama H, et al.
    A Negative Feedback Loop Controlling bHLH Complexes Is Involved in Vascular Cell Division and Differentiation in the Root Apical Meristem.
    Curr. Biol., 2015. 25(23): p. 3144-50
    [PMID:26616019]