PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pbr027483.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
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Family | NAC | ||||||||
Protein Properties | Length: 455aa MW: 50985.7 Da PI: 4.6684 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 102 | 8.4e-32 | 58 | 196 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk.....leleevikevd....iykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratk....sgyWka 85 lp+G++F+Ptd+e++++ L+k+ g++ ++++ i +vd i+ ++P++Lp +vk + + +fF+++ k+y+tg+rk+r+++ + +W++ Pbr027483.1 58 LPKGVKFDPTDQEIIWHLLAKSGVGDQkphpfIDEF--ILTVDddegICCSHPRKLP-NVKLDGSPSHFFHRAIKAYNTGTRKRRKIHdgdgDVRWHK 152 799**************9999966555476543332..433322344**********.667788999******************9883433446*** PP NAM 86 tgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128 tg++k+v+ +g ++g+kk++v+y + k++kt+Wvmh+y+l Pbr027483.1 153 TGRTKPVIL-DGVQKGCKKIMVLYmsTVGGGKPVKTNWVMHQYHL 196 *********.99************5434566778*********98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 4.45E-39 | 43 | 215 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 30.471 | 58 | 215 | IPR003441 | NAC domain |
Pfam | PF02365 | 3.3E-14 | 59 | 196 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 455 aa Download sequence Send to blast |
MAGPSWLFDK NRIATKIRSA SGSYDSVGIK WQSNPTKSCP KCHYTIDNSD VAQEWPGLPK 60 GVKFDPTDQE IIWHLLAKSG VGDQKPHPFI DEFILTVDDD EGICCSHPRK LPNVKLDGSP 120 SHFFHRAIKA YNTGTRKRRK IHDGDGDVRW HKTGRTKPVI LDGVQKGCKK IMVLYMSTVG 180 GGKPVKTNWV MHQYHLGIEE DEKDGEYVIS KIYYQQQEAK QADKTDQDVP ESIDAVITKV 240 DPVTPKLVTP EPPRAEQKLG DFDLGLDTPA PARDPFLQYR VEDGAEDEVH PDVASALDEA 300 HTEVNRAEDV RPESEIPDDY DQHKLENQAD EVINNTENID HAQEDPKWWD NESQNLLDSQ 360 QLVEGLSLCD ELLQSQSPNR GGHENGEQAH VKPRLADYAK LGPEDLKKDL EACQNIVLDP 420 ANIMDLDTPP DFRLSQLEFG SQESFLSWGG KVAD* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 5e-14 | 58 | 196 | 15 | 140 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor regulating the transcriptional activation response to gamma irradiation (PubMed:19549833). Required for stem-cell death induced by UVB or by gamma irradiation (PubMed:20634150). Not required for ATM activation, but participates in pathways governed by both ATM and ATR sensor kinases (PubMed:19549833). Involved in DNA damage response (DDR) system that regulates cell cycle arrest (PubMed:24399300). Functional homolog of animal p53 (PubMed:24736489). Regulates SMR5 and SMR7 transcription (PubMed:24399300). Regulates DNA repair and cytokinin signaling separately and plays a key role in controlling lateral root formation under genotoxic stress. {ECO:0000269|PubMed:19549833, ECO:0000269|PubMed:20634150, ECO:0000269|PubMed:24399300, ECO:0000305|PubMed:24736489}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pbr027483.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Not induced by zeocin or ionizing radiation treatment. {ECO:0000269|PubMed:23907539}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009336626.1 | 0.0 | PREDICTED: NAC domain-containing protein 8 | ||||
Swissprot | Q6NQK2 | 1e-174 | NAC8_ARATH; SUPPRESSOR OF GAMMA RESPONSE 1 | ||||
TrEMBL | A0A498IBI3 | 0.0 | A0A498IBI3_MALDO; Uncharacterized protein | ||||
STRING | XP_009336626.1 | 0.0 | (Pyrus x bretschneideri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5662 | 33 | 54 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G25580.1 | 1e-177 | NAC family protein |