PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pbr027478.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
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Family | B3 | ||||||||
Protein Properties | Length: 243aa MW: 26584.3 Da PI: 10.5945 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 95.7 | 3.2e-30 | 49 | 158 | 1 | 96 |
EEEE-..-HHHHTT-EE--HHH.HTT..............---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh..............ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkl 84 f+k+ tpsdv+k++rlv+pk++ae+h ++ +++ l +ed g++W+++++y+++s++yvltkGW++Fvk+++L +gD+v F++ Pbr027478.1 49 FEKAVTPSDVGKLNRLVIPKQHAEKHfplqsgsaatvtvsASSACKGVLLNFEDVGGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKNLMAGDIVSFQR 146 89*************************999877766666544444999*************************************************8 PP -SSSEE..EEEE CS B3 85 dgrsefelvvkv 96 + +++l++ + Pbr027478.1 147 STGPDKQLYIDW 158 766777777765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 6.2E-40 | 41 | 162 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 3.79E-29 | 47 | 158 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 4.61E-27 | 48 | 147 | No hit | No description |
SMART | SM01019 | 4.7E-23 | 49 | 162 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.5E-27 | 49 | 158 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 12.802 | 49 | 161 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 243 aa Download sequence Send to blast |
MLRKHTYNDE LEQSKRNNCA YGKRSRTNGP LGLFGTDNSR VPKAREQLFE KAVTPSDVGK 60 LNRLVIPKQH AEKHFPLQSG SAATVTVSAS SACKGVLLNF EDVGGKVWRF RYSYWNSSQS 120 YVLTKGWSRF VKEKNLMAGD IVSFQRSTGP DKQLYIDWKA RMSVNNNNNN GSSPVQVGPI 180 PMVRLFGVNI FKIPGSSGAG SVDAAAAAAI GGGCNNNIGK RMREMELLEL EFGKKPRIIG 240 AL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wid_A | 9e-59 | 46 | 161 | 11 | 117 | DNA-binding protein RAV1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Transcriptional repressor of flowering time on long day plants. Acts directly on FT expression by binding 5'-CAACA-3' and 5'-CACCTG-3 sequences (Probable). Functionally redundant with TEM1. {ECO:0000250, ECO:0000269|PubMed:18718758, ECO:0000305}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pbr027478.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | GU732460 | 0.0 | GU732460.1 Malus x domestica AP2 domain class transcription factor (AP2D36) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009336653.1 | 1e-180 | PREDICTED: AP2/ERF and B3 domain-containing transcription factor RAV1-like | ||||
Swissprot | P82280 | 8e-77 | RAV2_ARATH; AP2/ERF and B3 domain-containing transcription repressor RAV2 | ||||
TrEMBL | A0A482LTM5 | 1e-160 | A0A482LTM5_9ROSA; Transcription factor RAV2 | ||||
STRING | XP_009336653.1 | 1e-179 | (Pyrus x bretschneideri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2920 | 32 | 74 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G68840.2 | 5e-73 | related to ABI3/VP1 2 |