PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pbr027474.1

Organism

Pyrus bretschneideri

Taxonomic ID

225117

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus

Family

G2-like

Protein Properties

Length: 377aa MW: 41592 Da PI: 7.2656

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pbr027474.1	genome	CPETR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	101.1	7e-32	211	266	1	56
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 k+r++W+peLH+rF++a++qLGGs+ AtPk+i+elmkv+gLt+++vkSHLQkYRl+ Pbr027474.1 211 KQRRNWSPELHRRFLNALQQLGGSHAATPKQIRELMKVDGLTNDEVKSHLQKYRLH 266 79****************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	14.384	208	268	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	1.6E-28	209	269	IPR009057	Homeodomain-like
SuperFamily	SSF46689	5.18E-18	209	269	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	2.3E-27	211	266	IPR006447	Myb domain, plants
Pfam	PF00249	7.2E-8	213	264	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 377 aa Download sequence Send to blast
MESTEEMQAS SKLGFREYVK ALEEEMHKIQ VFKRELPLCY ELVTHAIERC KQQVSDTTAD 60 YMHGQSECSQ QTSSEGHVFE EFIPLKRTSS SDSEDDEVHE SQEAKDNEKD DKIAGGDKKK 120 SDWLRSVQLW NTTPDAPLKE ELPRKALVME VNRNGGAFQP FQKEKSIGKT NGPVAKQPSS 180 AAATSSTTDT VSGSSGENNK KEEKDGQGQR KQRRNWSPEL HRRFLNALQQ LGGSHAATPK 240 QIRELMKVDG LTNDEVKSHL QKYRLHTRRP TPTMRSNNNA AHAPQFVVVG GIWVPPQDYA 300 AVAATTASGE AANNGIYAPV ASTPAVTQVS PPVQRLRLKQ PEPSHSDERV SHSEGRGHSN 360 STATSSSTHT HISPAF*

Sequence ? help Back to Top

Protein Sequence Length: 377 aa Download sequence Send to blast

MESTEEMQAS SKLGFREYVK ALEEEMHKIQ VFKRELPLCY ELVTHAIERC KQQVSDTTAD  60
YMHGQSECSQ QTSSEGHVFE EFIPLKRTSS SDSEDDEVHE SQEAKDNEKD DKIAGGDKKK  120
SDWLRSVQLW NTTPDAPLKE ELPRKALVME VNRNGGAFQP FQKEKSIGKT NGPVAKQPSS  180
AAATSSTTDT VSGSSGENNK KEEKDGQGQR KQRRNWSPEL HRRFLNALQQ LGGSHAATPK  240
QIRELMKVDG LTNDEVKSHL QKYRLHTRRP TPTMRSNNNA AHAPQFVVVG GIWVPPQDYA  300
AVAATTASGE AANNGIYAPV ASTPAVTQVS PPVQRLRLKQ PEPSHSDERV SHSEGRGHSN  360
STATSSSTHT HISPAF*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	2e-14	211	264	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	2e-14	211	264	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	2e-14	211	264	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	2e-14	211	264	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	2e-14	211	264	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	2e-14	211	264	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	2e-14	211	264	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	2e-14	211	264	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	2e-14	211	264	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	2e-14	211	264	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	2e-14	211	264	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	2e-14	211	264	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in phosphate signaling in roots. {ECO:0000250\|UniProtKB:Q9FX67}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00160	DAP	Transfer from AT1G25550	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pbr027474.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009336613.1	0.0	PREDICTED: myb family transcription factor EFM
Swissprot	Q9FPE8	1e-103	HHO3_ARATH; Transcription factor HHO3
TrEMBL	A0A498I6H4	0.0	A0A498I6H4_MALDO; Uncharacterized protein
STRING	XP_009336613.1	0.0	(Pyrus x bretschneideri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3918	33	63

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G25550.1	3e-89	G2-like family protein

Publications ? help Back to Top
Nagarajan VK,Satheesh V,Poling MD,Raghothama KG,Jain A Arabidopsis MYB-Related HHO2 Exerts a Regulatory Influence on a Subset of Root Traits and Genes Governing Phosphate Homeostasis. Plant Cell Physiol., 2016. 57(6): p. 1142-52 [PMID:27016098]