PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr027455.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family C3H
Protein Properties Length: 317aa    MW: 35959.8 Da    PI: 6.6687
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr027455.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH38.22.3e-12180205126
                  --S---SGGGGTS--TTTTT-SS-SS CS
      zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                  y   +C+++ +tG+C yGd+CkF+H+
  Pbr027455.1 180 YQPDICKDYKETGYCGYGDSCKFMHD 205
                  67789********************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902291.96E-9177210IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.878179207IPR000571Zinc finger, CCCH-type
SMARTSM003561.1E-7179206IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.6E-12180210IPR000571Zinc finger, CCCH-type
PfamPF006424.3E-10180205IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:3.30.40.102.0E-13242303IPR013083Zinc finger, RING/FYVE/PHD-type
PfamPF139203.6E-8255296No hitNo description
SuperFamilySSF578505.55E-13255298No hitNo description
SMARTSM001848.5E-5256293IPR001841Zinc finger, RING-type
CDDcd001621.21E-7256297No hitNo description
PROSITE profilePS5008910.542256294IPR001841Zinc finger, RING-type
PROSITE patternPS005180271280IPR017907Zinc finger, RING-type, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 317 aa     Download sequence    Send to blast
MADSGENKEP GEVCNFFRKP SRRQNIRKRR TDEDHEEDDS KSGTSLSNQR KAQKSDGKLF  60
FSTGPSKTSV SDDRAVFEFE SSKEIQVEND SRATATMETE TEFSRDARAV RERVLKQAEE  120
ALKGKGKSTG NEKLYKGIHG YTDYKAGFRR ELTVASEKAG GAHGPLRASA HIRTSTRFDY  180
QPDICKDYKE TGYCGYGDSC KFMHDRGDYK SGWQMEKEWD EAEKARKRKL AMGEDDVDET  240
EEDDDDEDDG GLPFACFICR QPFVDPVVTK CNHYFCEHCA LKHHSKNKKC FVCDKPTLGI  300
FNTAHEIRKR MAAEGK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5z56_M1e-6553112317RING finger protein 113A
5z58_M1e-6553112317RING finger protein 113A
6ff4_t1e-6553112317RING finger protein 113A
6ff7_t1e-6553112317RING finger protein 113A
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr027455.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009336799.10.0PREDICTED: zinc finger CCCH domain-containing protein 1
RefseqXP_009336800.10.0PREDICTED: zinc finger CCCH domain-containing protein 1
RefseqXP_009336801.10.0PREDICTED: zinc finger CCCH domain-containing protein 1
RefseqXP_009336802.10.0PREDICTED: zinc finger CCCH domain-containing protein 1
SwissprotQ8GX841e-163C3H1_ARATH; Zinc finger CCCH domain-containing protein 1
TrEMBLA0A498KHE90.0A0A498KHE9_MALDO; Uncharacterized protein
STRINGXP_009336799.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF70823348
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01350.11e-165C3H family protein