PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr027399.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family bHLH
Protein Properties Length: 605aa    MW: 67864 Da    PI: 4.8954
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr027399.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH38.81.7e-12343386755
                  HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
          HLH   7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                   +Er+RR+++N+++  Lr+l+P+ +      K++Ka+iL  A+e++k+Lq
  Pbr027399.1 343 VAERKRRKKLNERLYHLRSLVPNiS------KMDKASILGDAIEFVKELQ 386
                  68*********************66......******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142152.4E-186150IPR025610Transcription factor MYC/MYB N-terminal
CDDcd000831.45E-13334387No hitNo description
SuperFamilySSF474595.37E-18336399IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.45336385IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.3E-17342391IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.5E-17343399IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.2E-10343386IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd048736.32E-4490552No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009555Biological Processpollen development
GO:0048657Biological Processanther wall tapetum cell differentiation
GO:0005634Cellular Componentnucleus
GO:0000978Molecular FunctionRNA polymerase II core promoter proximal region sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 605 aa     Download sequence    Send to blast
MQNLIDRLRP LVCLKGWDYC VLWKLSEDQR FIEWMDCCCS GTDGNTQTNG GQELLFPVYP  60
VLPCRDIMHH SRTNSCDLLA QLPSSLPLES GIYAQALISN QIIWLNSANR DLSPMERDET  120
RVLVPSGGGL IELFVSRDVS EDQQVIDFIT AQCNISHEQD ILLSASCNAS TNTSFTVDIN  180
NMSNDRRPKA FLVDDNGGND HLNNNQSFQQ QPVFPAMALD HNSNLPCDIS VDQIRLCSTS  240
PMNFLQNSIN NNVYNFDQGS HESLGEMGLQ ADTNAQNLHN NIQVPEGIEN IEQQVVDDQD  300
SIKHEGGRTA DHSASDCSDQ FDDDGGTNYR RRTGKKPQSK NLVAERKRRK KLNERLYHLR  360
SLVPNISKMD KASILGDAIE FVKELQRQEK ELQEELEQHS NDGGSKKRNS NNICGNHTNF  420
QPETLSQNGN TIANKQENDE LPNGFHVGTA GDIGNISKQK NQDSDSTNDR GQEMEPQVGV  480
TQLDGNEFFV SVFCEHKPGG FVRLMEALDS LGLEVTNANL TSFRSLVSNV FKVEKKDTEI  540
VQADHVRDSL LEITRNPSSK GWPEMIAKAS GNVSPLDHFQ HDHYQQHHLH DYHASSYQLQ  600
HLYS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A2e-13334401269Transcription factor MYC2
5gnj_B2e-13334401269Transcription factor MYC2
5gnj_E2e-13334401269Transcription factor MYC2
5gnj_F2e-13334401269Transcription factor MYC2
5gnj_G2e-13334401269Transcription factor MYC2
5gnj_I2e-13334401269Transcription factor MYC2
5gnj_M2e-13334401269Transcription factor MYC2
5gnj_N2e-13334401269Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1329350RRRTGKKPQSKNLVAERKRRKK
2334349KKPQSKNLVAERKRRK
3344351ERKRRKKL
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr027399.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018502851.10.0PREDICTED: transcription factor ABORTED MICROSPORES-like
TrEMBLA0A498JQF20.0A0A498JQF2_MALDO; Uncharacterized protein
STRINGXP_009355697.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF42253247
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G16910.11e-126bHLH family protein