PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr027397.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family bHLH
Protein Properties Length: 564aa    MW: 64030.3 Da    PI: 5.4325
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr027397.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH22.71.8e-07323348630
                  HHHHHHHHHHHHHHHHHHHCTSCC.C CS
          HLH   6 nerErrRRdriNsafeeLrellPk.a 30 
                   ++ErrRR+++N+++  Lr+l+P  +
  Pbr027397.1 323 LIAERRRRKKLNDRLYALRSLVPIiS 348
                  579********************844 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142154.8E-179153IPR025610Transcription factor MYC/MYB N-terminal
CDDcd000831.80E-5315345No hitNo description
SuperFamilySSF474596.02E-8316364IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS508889.972317378IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.7E-5323348IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.2E-6324350IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd048730.0036450513No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 564 aa     Download sequence    Send to blast
MMIMPYLIHR LRSLVGLKGW DCCVLWKLSE DQRFIELIDC CCAGTEITQS DAGQNLPFPP  60
VLACRDTILQ HPRTTSCDLL AQIPSSMPLD SGIYAETLIS NQTSWLNFSN NTFLSTLEET  120
IGTRVVIPIP GGIIELLVTK QVFEDQHVID FVAAQYNISL EEEALTNITG TRRMSEVGSK  180
RFLDHLSFKT TSENLNLHPY DVSMERTSNS PMNFSQQFTN YNSRNLTKNN IDISSAENGF  240
QEMEAMQRSI TSERQQHMDM QQYMEALVPN IDQQEGNEKR DSNTHEAEGQ AGDFMSDCSD  300
QIDEDEDTKY QRRTGKRPQA KNLIAERRRR KKLNDRLYAL RSLVPIISKQ LQKQAKQLQD  360
ELDDHAEDDA ATNNVKSEIQ SRSGVDHIRP KTDDHQDDQK ASNGSHFGTP GDCSVSKQSR  420
DYSYTVHDHK TEQMEPQVEV AQLDGNQFFV KVFCEQKPGG FVRLMEALSS LSLEVTNANV  480
TTFRCLVSNV FLVEKKDTDM VEADDVRDSL LELTRNPSRP RSETAKAAEN GVGLDNHHDH  540
HHHQHLHNHH FSPLHLHHLP NEA*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1325332ERRRRKKL
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr027397.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028959482.10.0transcription factor ABORTED MICROSPORES
TrEMBLA0A498JWU90.0A0A498JWU9_MALDO; Uncharacterized protein
STRINGXP_008377800.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF42253247
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G16910.11e-119bHLH family protein