PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr027332.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family bHLH
Protein Properties Length: 456aa    MW: 49929.1 Da    PI: 6.3555
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr027332.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH17.76.6e-063453831154
                  HHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
          HLH  11 rRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                   R +++ +++  L++l+ +      +K + a++L +A+eYIk L
  Pbr027332.1 345 VRKEKMGDRITALQQLVSPF-----GKTDTASVLSEAIEYIKFL 383
                  5778999**********998.....8****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088812.894334383IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.23E-12344400IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.28E-7344387No hitNo description
Gene3DG3DSA:4.10.280.102.0E-9344393IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003530.0036345389IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 456 aa     Download sequence    Send to blast
MADEFQTPGN WWDSSSRTRF ETGASPSSSS LNTLGSFGWQ PDIVDIKARS SMDSGSVSGT  60
SSMVFHDTHK LQEGTDSAGG GSDPNLHMMG LGLSSQATDW NQALFRGEKE TSFRSILQEN  120
MNSNTANFQQ ESDQQLQWRD KLFAGGCGDS SNNEFKQMTR GFSLDQTQFS PRYSSGESTV  180
TCQGLPSGFQ MDSASGALYG SPSTILQGLL GPHHDNQPQQ PSSAIINFPY QGNYGINNSS  240
ELLPSWSKVP QFLRTSPPKQ PPQSHLQFSN DAPFWNAPHE AAMKDVRPSF FPSLQPQFPT  300
ARFDEKPKNI SEVQESGAVG KKSGSEAASK RPRNETSSPL PAFKVRKEKM GDRITALQQL  360
VSPFGKTDTA SVLSEAIEYI KFLHEQVNVL STPYMKSGAV IQHQQQNSDK VKDPDGPKQD  420
LRSRGLCLVP VSSTFPVTHE TTVDFWTPTF GGTFR*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr027332.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009355551.10.0PREDICTED: transcription factor bHLH123-like isoform X1
SwissprotQ8GXT34e-90BH123_ARATH; Transcription factor bHLH123
TrEMBLA0A498ILG90.0A0A498ILG9_MALDO; Uncharacterized protein
STRINGXP_009355551.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF111833106
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G20640.13e-84bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]