PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr027295.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family NAC
Protein Properties Length: 290aa    MW: 32604.7 Da    PI: 8.3422
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr027295.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM125.93.4e-391010532128
          NAM  32 evikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                  + + evd++k+ePwd+p+++  + kewyf+s+rd+kyatg r+nrat++gyWkatgkd+++l+ kg+lvg++ktLvfy+grapkg+k+dWvmhe+r+
  Pbr027295.1  10 TLMIEVDLNKCEPWDIPESACVGGKEWYFYSQRDRKYATGLRTNRATATGYWKATGKDRPILR-KGSLVGMRKTLVFYQGRAPKGRKSDWVMHEFRV 105
                  45889************7777799**************************************9.999****************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100544.1371129IPR003441NAC domain
SuperFamilySSF1019412.75E-4511130IPR003441NAC domain
PfamPF023654.0E-1521105IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 290 aa     Download sequence    Send to blast
MKKVTQSDST LMIEVDLNKC EPWDIPESAC VGGKEWYFYS QRDRKYATGL RTNRATATGY  60
WKATGKDRPI LRKGSLVGMR KTLVFYQGRA PKGRKSDWVM HEFRVEGPLG PPKISSLKED  120
WALCRVFYKN REIAAKPSMG ISCYDDTSTL TLPALMDSYI SFDGQTQSRT QTQTQPQESE  180
QVPCFSMFSQ NQNPFFTHTD ITSSQPNIPT KHNNNNDTTT FGGLPNMTNF LDPFSCDKIV  240
LKTVLSHLTK MESTTYPTLN GSSPSFGEGS SSENYLSDVG MPNNIWSHY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A2e-381113246171Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that mediates auxin signaling to promote lateral root development. Activates the expression of two downstream auxin-responsive genes, DBP and AIR3. {ECO:0000269|PubMed:11114891}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr027295.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by auxin.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF1981230.0KF198123.1 Malus hupehensis NAC domain protein (NAC88) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009336675.10.0PREDICTED: NAC domain-containing protein 21/22-like
SwissprotQ84TE61e-102NAC22_ARATH; NAC domain-containing protein 21/22
TrEMBLA0A498JRP90.0A0A498JRP9_MALDO; Uncharacterized protein
STRINGXP_009336675.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF100103241
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G56010.23e-97NAC domain containing protein 1
Publications ? help Back to Top
  1. Le Hénanff G, et al.
    Grapevine NAC1 transcription factor as a convergent node in developmental processes, abiotic stresses, and necrotrophic/biotrophic pathogen tolerance.
    J. Exp. Bot., 2013. 64(16): p. 4877-93
    [PMID:24043850]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Xiao D, et al.
    SENESCENCE-SUPPRESSED PROTEIN PHOSPHATASE Directly Interacts with the Cytoplasmic Domain of SENESCENCE-ASSOCIATED RECEPTOR-LIKE KINASE and Negatively Regulates Leaf Senescence in Arabidopsis.
    Plant Physiol., 2015. 169(2): p. 1275-91
    [PMID:26304848]
  4. Huo X,Wang C,Teng Y,Liu X
    Identification of miRNAs associated with dark-induced senescence in Arabidopsis.
    BMC Plant Biol., 2015. 15: p. 266
    [PMID:26530097]
  5. Chen X, et al.
    Auxin-Independent NAC Pathway Acts in Response to Explant-Specific Wounding and Promotes Root Tip Emergence during de Novo Root Organogenesis in Arabidopsis.
    Plant Physiol., 2016. 170(4): p. 2136-45
    [PMID:26850273]
  6. Liu C,Wang B,Li Z,Peng Z,Zhang J
    TsNAC1 Is a Key Transcription Factor in Abiotic Stress Resistance and Growth.
    Plant Physiol., 2018. 176(1): p. 742-756
    [PMID:29122985]