PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pbr027204.1

Organism

Pyrus bretschneideri

Taxonomic ID

225117

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus

Family

GRAS

Protein Properties

Length: 530aa MW: 58984.4 Da PI: 6.455

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pbr027204.1	genome	CPETR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	371.6	1e-113	157	528	1	374
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetsekn..sseelaalklfsevsPilkfshl 96 lv+lL++cAeav+ +d++ a+alL++l +a g+++qR+a++f+++La+rla ++ + + s+ s k+ +++ al+l +e++P ++f+h+ Pbr027204.1 157 LVQLLIACAEAVACRDKSHASALLSELWANALVFGSSFQRVASCFVQGLANRLALVQPLGAVGFIGSAMSMKDfaLDKKEEALRLVYEICPHIQFGHF 254 689************************************************9855543333333333333344999999************* PP GRAS 97 taNqaIleavegeervHiiDfdis....qGlQWpaLlqaLasRpegpp.slRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledl 189 +aN+ Ilea+ege vH++D++++ +G QW L+q+La+R+++pp +lRiTgvg +++l+ +g L+ +Ae+lg+++ef+v v+++le+l Pbr027204.1 255 VANSSILEAFEGEFFVHVVDLGMTlglpHGDQWRGLIQSLATRTGQPPtRLRITGVGL----CSDRLQIIGGELEAYAESLGINLEFSV-VESNLENL 347 ****************99873333667*********88877*****....9*********************9.7*** PP GRAS 190 eleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvEr 287 ++e++++ gE+l+Vn++lqlh +++es + +vL+++ +lsPk++v+veq+++hn++ Fl rf+eal+yysa+fdsl+a lp+ + r+k+E+ Pbr027204.1 348 RPEDIKMYDGEVLVVNSILQLHCVVKESRGALN---SVLQMIHELSPKILVLVEQDSSHNGPFFLGRFMEALHYYSAIFDSLDAMLPKYDTRRAKMEQ 442 *********************88877777...8********************************************************* PP GRAS 288 ellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374 +++++ei+n+++ceg +r+erhe++ +Wr+r+++aGF++ p++ + +qak l ++k +gy++ ee+g+lvlgW+++p+v++S+W+ Pbr027204.1 443 FYFAEEIKNIISCEGPARVERHERVDQWRRRMSRAGFQATPIK--MLSQAKQWLGNIKvCEGYTIMEEKGCLVLGWNSKPIVAASCWK 528 *************************************96..79**************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	59.05	131	509	IPR005202	Transcription factor GRAS
Pfam	PF03514	3.5E-111	157	528	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 530 aa Download sequence Send to blast
MGPNRNFLPK EYMINNERTN KRSVLDLITH SAASAMPCYP YPYTPFLEEG ATVSILPYSD 60 ESGDHKRLKK NINISDSHNS LYSGGGSESS CITDISLSRS SSANSFKTLP RLHFRDHIWT 120 YSQRYLAAEA VEEAATAMSN AKENRAEEDG TADGMRLVQL LIACAEAVAC RDKSHASALL 180 SELWANALVF GSSFQRVASC FVQGLANRLA LVQPLGAVGF IGSAMSMKDF ALDKKEEALR 240 LVYEICPHIQ FGHFVANSSI LEAFEGEFFV HVVDLGMTLG LPHGDQWRGL IQSLATRTGQ 300 PPTRLRITGV GLCSDRLQII GGELEAYAES LGINLEFSVV ESNLENLRPE DIKMYDGEVL 360 VVNSILQLHC VVKESRGALN SVLQMIHELS PKILVLVEQD SSHNGPFFLG RFMEALHYYS 420 AIFDSLDAML PKYDTRRAKM EQFYFAEEIK NIISCEGPAR VERHERVDQW RRRMSRAGFQ 480 ATPIKMLSQA KQWLGNIKVC EGYTIMEEKG CLVLGWNSKP IVAASCWKC*

Sequence ? help Back to Top

Protein Sequence Length: 530 aa Download sequence Send to blast

MGPNRNFLPK EYMINNERTN KRSVLDLITH SAASAMPCYP YPYTPFLEEG ATVSILPYSD  60
ESGDHKRLKK NINISDSHNS LYSGGGSESS CITDISLSRS SSANSFKTLP RLHFRDHIWT  120
YSQRYLAAEA VEEAATAMSN AKENRAEEDG TADGMRLVQL LIACAEAVAC RDKSHASALL  180
SELWANALVF GSSFQRVASC FVQGLANRLA LVQPLGAVGF IGSAMSMKDF ALDKKEEALR  240
LVYEICPHIQ FGHFVANSSI LEAFEGEFFV HVVDLGMTLG LPHGDQWRGL IQSLATRTGQ  300
PPTRLRITGV GLCSDRLQII GGELEAYAES LGINLEFSVV ESNLENLRPE DIKMYDGEVL  360
VVNSILQLHC VVKESRGALN SVLQMIHELS PKILVLVEQD SSHNGPFFLG RFMEALHYYS  420
AIFDSLDAML PKYDTRRAKM EQFYFAEEIK NIISCEGPAR VERHERVDQW RRRMSRAGFQ  480
ATPIKMLSQA KQWLGNIKVC EGYTIMEEKG CLVLGWNSKP IVAASCWKC*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3g_A	4e-61	142	527	8	378	Protein SCARECROW
5b3h_A	5e-61	142	527	7	377	Protein SCARECROW
5b3h_D	5e-61	142	527	7	377	Protein SCARECROW
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pbr027204.1

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009336573.1	0.0	PREDICTED: DELLA protein RGL1-like
TrEMBL	A0A192ADG0	0.0	A0A192ADG0_PYRPY; DELLA protein RGL2
STRING	XP_009336573.1	0.0	(Pyrus x bretschneideri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF8730	29	45

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G66350.1	1e-82	RGA-like 1