PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pbr026954.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
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Family | CO-like | ||||||||
Protein Properties | Length: 860aa MW: 93604.5 Da PI: 5.0116 | ||||||||
Description | CO-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 22.1 | 3.2e-07 | 12 | 51 | 4 | 37 |
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg......H 37 C+ ++++++ l+C+ ++ lC C ++ H+ H Pbr026954.1 12 VPCDFCSDQPAVLYCRADSAKLCLFCDQQVHSAnllsrkH 51 57*****************************555565556 PP | |||||||
2 | zf-B_box | 21.2 | 6.2e-07 | 54 | 99 | 3 | 42 |
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42 ++C+++ ++ ++ C +++ lC++C H + H+++pl Pbr026954.1 54 SQICDNCASEAVSVRCSTDNLVLCQECDWDAHGScsvtaaHDRTPL 99 689*************************999954888888888775 PP | |||||||
3 | CCT | 63 | 9.3e-22 | 439 | 482 | 1 | 44 |
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 R +a+lRYkeK+ktR+++K+irYesRKa+A++R+R+KGrFvk++ Pbr026954.1 439 RGNAMLRYKEKKKTRRYDKHIRYESRKARADTRKRIKGRFVKAT 482 7789*************************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00336 | 1.3E-13 | 9 | 56 | IPR000315 | B-box-type zinc finger |
PROSITE profile | PS50119 | 9.613 | 9 | 56 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 6.6E-6 | 12 | 53 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 9.78E-9 | 12 | 56 | No hit | No description |
PROSITE profile | PS50119 | 10.125 | 52 | 99 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 2.43E-7 | 56 | 99 | No hit | No description |
SMART | SM00336 | 2.7 | 57 | 99 | IPR000315 | B-box-type zinc finger |
PROSITE profile | PS51017 | 14.813 | 439 | 481 | IPR010402 | CCT domain |
Pfam | PF06203 | 9.4E-16 | 439 | 481 | IPR010402 | CCT domain |
SuperFamily | SSF52058 | 5.53E-36 | 497 | 674 | IPR032675 | Leucine-rich repeat domain, L domain-like |
Pfam | PF08263 | 1.1E-10 | 497 | 536 | IPR013210 | Leucine-rich repeat-containing N-terminal, plant-type |
Gene3D | G3DSA:3.80.10.10 | 2.3E-43 | 498 | 675 | IPR032675 | Leucine-rich repeat domain, L domain-like |
SMART | SM00369 | 210 | 562 | 585 | IPR003591 | Leucine-rich repeat, typical subtype |
SMART | SM00369 | 27 | 586 | 610 | IPR003591 | Leucine-rich repeat, typical subtype |
SMART | SM00369 | 49 | 634 | 658 | IPR003591 | Leucine-rich repeat, typical subtype |
SuperFamily | SSF52058 | 3.64E-33 | 688 | 853 | IPR032675 | Leucine-rich repeat domain, L domain-like |
Pfam | PF08263 | 6.2E-10 | 689 | 728 | IPR013210 | Leucine-rich repeat-containing N-terminal, plant-type |
Gene3D | G3DSA:3.80.10.10 | 1.4E-39 | 690 | 856 | IPR032675 | Leucine-rich repeat domain, L domain-like |
SMART | SM00369 | 20 | 778 | 802 | IPR003591 | Leucine-rich repeat, typical subtype |
SMART | SM00369 | 34 | 826 | 850 | IPR003591 | Leucine-rich repeat, typical subtype |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005622 | Cellular Component | intracellular | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 860 aa Download sequence Send to blast |
MVNPKSGGVE GVPCDFCSDQ PAVLYCRADS AKLCLFCDQQ VHSANLLSRK HVRSQICDNC 60 ASEAVSVRCS TDNLVLCQEC DWDAHGSCSV TAAHDRTPLE GFSGCPSALE LASLLGLDLQ 120 DKSLLARSDP QLQNWDMGLP SMDSSWNRFG MQDLMVPIQN GVVDLTGDMK RQNSGGISGK 180 QKQGIQKQLL DLLKRDLDGS GDGRGGGGSG SENLVPGTQT RNGWQEENGN GNGDVEGLAS 240 IDVRNEKGGV GGVAARAASL ETVLQQQTPF STLLKMPEEN RDGDMLWDSN PHGQNTQIWD 300 FNLGRLRDHE GSGPLEVTYG SNVSGFMIKD FSELMKEPSL TDTKMLRDIY QMNCPVGQDD 360 TKFNITSNNP AGSLGPATSE RNNVPIGQPS SGSVFGDDKG SGASNDINFM EQSFLMRGDG 420 ISMRTLGTKA DMELLAQNRG NAMLRYKEKK KTRRYDKHIR YESRKARADT RKRIKGRFVK 480 ATTEAPDVVA IASVDCNSER DALNVWKYSL VDPNNALQSW NSTLPSPCTW YHVTCNSENS 540 VIRVDLADNN LSGILVPELG ILANLEYLEV YGNNLFGTIP EEIGNLKKLV SLDLYQNNLT 600 GTIPTSLGQL SSLRFMRFYS NRLTGSIPPS LGNLTSLQIL ELNSNLLTGT VPVEVINLVQ 660 SGSYLVTDLG HNQFDISVSS VAIASVESNS EGDALSVWKS SLVDPNNVLQ SWDPTLVNPC 720 TWFHVTCNSE NSVTRVDLGD ANLSGLIVPE LGILANLQYL EVFSNNLFGS IPKEIGNLTK 780 LVSLDLYRNN LTGTIPTSLG HLRSLRFMRV FSNSLTGPIP RSLGKLKSLQ ILELNSNLLT 840 GTIPAELLYL VRFGNLNLL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4m7e_C | 2e-64 | 497 | 845 | 1 | 157 | BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 |
4m7e_D | 2e-64 | 497 | 845 | 1 | 157 | BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 |
4mn8_B | 3e-64 | 491 | 845 | 20 | 182 | BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pbr026954.1 |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009336468.1 | 0.0 | PREDICTED: zinc finger protein CONSTANS-LIKE 15-like isoform X1 | ||||
TrEMBL | A0A498IFD1 | 0.0 | A0A498IFD1_MALDO; Uncharacterized protein | ||||
STRING | XP_009336468.1 | 0.0 | (Pyrus x bretschneideri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4737 | 28 | 43 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G33500.2 | 2e-49 | B-box type zinc finger protein with CCT domain |