PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pbr026913.1

Organism

Pyrus bretschneideri

Taxonomic ID

225117

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus

Family

bZIP

Protein Properties

Length: 363aa MW: 41094.4 Da PI: 6.7963

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pbr026913.1	genome	CPETR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	36.8	8.7e-12	75	112	2	39
XXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 2 kelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLe 39 + +k++rr+++NReAAr+sR RKka++++Le+ +L Pbr026913.1 75 PTDKVQRRLAQNREAARKSRMRKKAYVQQLETSRLKLI 112 579****************************8555544 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	3.7E-9	70	123	No hit	No description
SMART	SM00338	1.1E-7	74	134	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	1.7E-8	76	107	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	8.956	76	118	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	9.85E-8	78	115	No hit	No description
PROSITE pattern	PS00036	0	81	96	IPR004827	Basic-leucine zipper domain
Pfam	PF14144	7.4E-29	166	239	IPR025422	Transcription factor TGA like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009409	Biological Process	response to cold
GO:0042742	Biological Process	defense response to bacterium
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 363 aa Download sequence Send to blast
MNSPSTQFVT SRRMGVFEPI HQISMWDESF RSSGNFNASA SMILDEDTKL DNQSEDASHG 60 ILGPSSKYDQ EATKPTDKVQ RRLAQNREAA RKSRMRKKAY VQQLETSRLK LIQLEQELDR 120 VRQQGVYIGG GLDTNPLGFS GTINSGITTF EMEYGHWVEE QNRQSCELRN ALKACISDVE 180 LRFLVDNGMS HYFELFSMKS TAAKADVFYV MSGMWKTSAE RFFSWIGGFR PSELLKVLQP 240 HLDPLTDQQL LDVHNLRQSC QQAEDALSQG MDKLQHTLAE TVAACQLDEG SYVPQMANAM 300 ERLEALVSFV TQADHLRRET LQQMSRILTT RQAARGLAAL GEYFHRLRAL SSLWANRPRE 360 PA*

Sequence ? help Back to Top

Protein Sequence Length: 363 aa Download sequence Send to blast

MNSPSTQFVT SRRMGVFEPI HQISMWDESF RSSGNFNASA SMILDEDTKL DNQSEDASHG  60
ILGPSSKYDQ EATKPTDKVQ RRLAQNREAA RKSRMRKKAY VQQLETSRLK LIQLEQELDR  120
VRQQGVYIGG GLDTNPLGFS GTINSGITTF EMEYGHWVEE QNRQSCELRN ALKACISDVE  180
LRFLVDNGMS HYFELFSMKS TAAKADVFYV MSGMWKTSAE RFFSWIGGFR PSELLKVLQP  240
HLDPLTDQQL LDVHNLRQSC QQAEDALSQG MDKLQHTLAE TVAACQLDEG SYVPQMANAM  300
ERLEALVSFV TQADHLRRET LQQMSRILTT RQAARGLAAL GEYFHRLRAL SSLWANRPRE  360
PA*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. May be involved in the induction of the systemic acquired resistance (SAR) via its interaction with NPR1. Could also bind to the Hex-motif (5'-TGACGTGG-3') another cis-acting element found in plant histone promoters.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00502	DAP	Transfer from AT5G10030	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pbr026913.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	-	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009336382.1	0.0	PREDICTED: transcription factor TGA4-like isoform X4
Swissprot	Q39162	0.0	TGA4_ARATH; Transcription factor TGA4
TrEMBL	A0A498I1C8	0.0	A0A498I1C8_MALDO; Uncharacterized protein
STRING	XP_009336377.1	0.0	(Pyrus x bretschneideri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1096	34	104

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G10030.2	0.0	TGACG motif-binding factor 4

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Canales J,Contreras-López O,Álvarez JM,Gutiérrez RA Nitrate induction of root hair density is mediated by TGA1/TGA4 and CPC transcription factors in Arabidopsis thaliana. Plant J., 2017. 92(2): p. 305-316 [PMID:28771873]