PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pbr026781.2

Organism

Pyrus bretschneideri

Taxonomic ID

225117

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus

Family

FAR1

Protein Properties

Length: 745aa MW: 86793.2 Da PI: 5.16

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pbr026781.2	genome	CPETR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	69.7	7.3e-22	134	217	1	89
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 ++Yn YAk +GF +r+++s ++++++e + ++C++eg+++ ++ + ++++etrtgC a++++++ ++++w+v++++leHnH + Pbr026781.2 134 NYYNYYAKALGFAIRVKSSWTKRNSKEKRGAVLCCNCEGFKTIKEAN-----SRKKETRTGCLAMIRLRLVESNRWRVDEVKLEHNHLF 217 69**************************************99888.....88999****************************77 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	2.3E-19	134	217	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	3.9E-31	339	432	IPR018289	MULE transposase domain
PROSITE profile	PS50966	9.483	625	661	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	7.2E-5	636	663	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 745 aa Download sequence Send to blast
MNGDGSFSPI VQGLSEDHDI HITIKEGSPN SEQLLEDENN DLENDCEQLF EIEGNEAESE 60 RDDTSDQFFD IESNDHENDQ GDINEQLFEI ESNNHEISRD DRTLIDDQNG GSQEKDYPPP 120 FVGLEFDSYD DAYNYYNYYA KALGFAIRVK SSWTKRNSKE KRGAVLCCNC EGFKTIKEAN 180 SRKKETRTGC LAMIRLRLVE SNRWRVDEVK LEHNHLFDPE RAQNSKSHKR MDFGAKRKME 240 STPDVEVRTI KLYRTPVVDA VGYGSSNSNE GETNNQVDRF KRLKLKKGDA RAMYNYFCRA 300 QLTDPNFFYV IDLNDEGHMR NVFWIDSRSR AAYSYFNDVV SFDTTCLSNN YEIPLAAFVG 360 VNHHGQTILL GCCLLADETP ETYTWLFRAW LTCMSGRPPQ TIITSQCKAL QSAIAEVFPR 420 AHHRLCSSHV VQSILENMGA IQEHEAFQLI LSTTVYDSVK VDEFELAWED MVKRFRIKDR 480 EFIRSLFEDR ERWVPAYSKD TFFAVMPNIQ NGESTNPFFH SYIHPQTSLE EFLSVYDVIL 540 EKKRQEEAHN DNESRELSSM LRTRYYYEVQ LSKFYTKDVF RKFQDEVVMM SSCFSITQVH 600 TNGPIVTYMI KEREGEEILR GVRNFEVMYD KAGAEIRCMC SCFNLNGYLC RHALCILNYN 660 GVEEIPFQYI LSRWRKDFKR LYVPNLGSNN VDITNPVQWF DHLYRRAMQV VQEGMISQDH 720 FMVSWQAFKE TLNKVRLVAD KHVQ*

Sequence ? help Back to Top

Protein Sequence Length: 745 aa Download sequence Send to blast

MNGDGSFSPI VQGLSEDHDI HITIKEGSPN SEQLLEDENN DLENDCEQLF EIEGNEAESE  60
RDDTSDQFFD IESNDHENDQ GDINEQLFEI ESNNHEISRD DRTLIDDQNG GSQEKDYPPP  120
FVGLEFDSYD DAYNYYNYYA KALGFAIRVK SSWTKRNSKE KRGAVLCCNC EGFKTIKEAN  180
SRKKETRTGC LAMIRLRLVE SNRWRVDEVK LEHNHLFDPE RAQNSKSHKR MDFGAKRKME  240
STPDVEVRTI KLYRTPVVDA VGYGSSNSNE GETNNQVDRF KRLKLKKGDA RAMYNYFCRA  300
QLTDPNFFYV IDLNDEGHMR NVFWIDSRSR AAYSYFNDVV SFDTTCLSNN YEIPLAAFVG  360
VNHHGQTILL GCCLLADETP ETYTWLFRAW LTCMSGRPPQ TIITSQCKAL QSAIAEVFPR  420
AHHRLCSSHV VQSILENMGA IQEHEAFQLI LSTTVYDSVK VDEFELAWED MVKRFRIKDR  480
EFIRSLFEDR ERWVPAYSKD TFFAVMPNIQ NGESTNPFFH SYIHPQTSLE EFLSVYDVIL  540
EKKRQEEAHN DNESRELSSM LRTRYYYEVQ LSKFYTKDVF RKFQDEVVMM SSCFSITQVH  600
TNGPIVTYMI KEREGEEILR GVRNFEVMYD KAGAEIRCMC SCFNLNGYLC RHALCILNYN  660
GVEEIPFQYI LSRWRKDFKR LYVPNLGSNN VDITNPVQWF DHLYRRAMQV VQEGMISQDH  720
FMVSWQAFKE TLNKVRLVAD KHVQ*

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development. May have a role in controlling flowering time. {ECO:0000269\|PubMed:15591448}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pbr026781.2

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009336310.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 8
Swissprot	Q9S793	0.0	FRS8_ARATH; Protein FAR1-RELATED SEQUENCE 8
TrEMBL	M5XGN7	0.0	M5XGN7_PRUPE; Uncharacterized protein
STRING	XP_009336310.1	0.0	(Pyrus x bretschneideri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF40	30	530

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G80010.1	0.0	FAR1-related sequence 8

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]