PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pbr026780.1

Organism

Pyrus bretschneideri

Taxonomic ID

225117

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus

Family

FAR1

Protein Properties

Length: 668aa MW: 76950.7 Da PI: 7.725

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pbr026780.1	genome	CPETR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	69.8	6.7e-22	60	143	1	89
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 ++Yn YAkevGF+vr+++s +++++e + + ++Cs +g+++ ++ + r r+etrtgC a++++++ ++++w++ ++ leHnH l Pbr026780.1 60 NYYNCYAKEVGFRVRVKNSWFKRNSREKYGAVLCCSSQGFKRIKDVN-----RLRKETRTGCPAMIRMRLVDSKRWRILEVTLEHNHLL 143 69***************************************9988.....99*******************************87 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	5.5E-19	60	143	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	6.5E-34	262	356	IPR018289	MULE transposase domain
PROSITE profile	PS50966	9.99	549	585	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	9.3E-5	557	582	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	7.5E-7	560	587	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 668 aa Download sequence Send to blast
MEVASLDSEQ VPDGECNEIV TDGDGVLTES DVQNGVTEGR KEFVAPAVGM EFESYDDAYN 60 YYNCYAKEVG FRVRVKNSWF KRNSREKYGA VLCCSSQGFK RIKDVNRLRK ETRTGCPAMI 120 RMRLVDSKRW RILEVTLEHN HLLGAKMYKS INKMGSGTKR KSQSSSDAEK RTIKLYRALV 180 IDSGGNGTSN SNIADVRNFS DHPDQLNLRK GDTQAIYNYL CRMQLTNPNF FYLMDFNDDG 240 LLRNVFWIDA RCRAACGYFG DVIYFDNTYL SNKYDIPLVA FVGINHHGQA VLLGCALLAG 300 ETTESYTWLF KAWLTCVSGH SPQTIITDRC KALQSAIAEV FPRCHHRFGL SHIMKKVPEK 360 LGGLRNYDAI RKALTKAVYE TLKVIEFEAA WGFMIQRFGV GDHEWLRSLY EERFWWAPVY 420 LKETFFAGMA AARPGEALSP FFDRYVHKQT PLKEFLDKYE LALQKKHKDE ALADIESRSS 480 SPTLKTRCSF ELQLSKAYTR EIFEKFQFEV EEMYSCLSTT QLHVDGPIII FLVKERVVVE 540 GSRREIRDYE VLYNRTAGEV RCICSCFNFY GYLCRHALCV LNYNGVEEIP SKYILPRWKK 600 DYKRLYIPDQ GSSNVDATDR VQWFNQLYRS ALHIVEEGVI SLDHYKVALQ AFEESLDRVH 660 VVEDKHE*

Sequence ? help Back to Top

Protein Sequence Length: 668 aa Download sequence Send to blast

MEVASLDSEQ VPDGECNEIV TDGDGVLTES DVQNGVTEGR KEFVAPAVGM EFESYDDAYN  60
YYNCYAKEVG FRVRVKNSWF KRNSREKYGA VLCCSSQGFK RIKDVNRLRK ETRTGCPAMI  120
RMRLVDSKRW RILEVTLEHN HLLGAKMYKS INKMGSGTKR KSQSSSDAEK RTIKLYRALV  180
IDSGGNGTSN SNIADVRNFS DHPDQLNLRK GDTQAIYNYL CRMQLTNPNF FYLMDFNDDG  240
LLRNVFWIDA RCRAACGYFG DVIYFDNTYL SNKYDIPLVA FVGINHHGQA VLLGCALLAG  300
ETTESYTWLF KAWLTCVSGH SPQTIITDRC KALQSAIAEV FPRCHHRFGL SHIMKKVPEK  360
LGGLRNYDAI RKALTKAVYE TLKVIEFEAA WGFMIQRFGV GDHEWLRSLY EERFWWAPVY  420
LKETFFAGMA AARPGEALSP FFDRYVHKQT PLKEFLDKYE LALQKKHKDE ALADIESRSS  480
SPTLKTRCSF ELQLSKAYTR EIFEKFQFEV EEMYSCLSTT QLHVDGPIII FLVKERVVVE  540
GSRREIRDYE VLYNRTAGEV RCICSCFNFY GYLCRHALCV LNYNGVEEIP SKYILPRWKK  600
DYKRLYIPDQ GSSNVDATDR VQWFNQLYRS ALHIVEEGVI SLDHYKVALQ AFEESLDRVH  660
VVEDKHE*

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development. May have a role in controlling flowering time. {ECO:0000269\|PubMed:15591448}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pbr026780.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009336308.2	0.0	PREDICTED: uncharacterized protein LOC103928916
Swissprot	Q9SSQ4	0.0	FRS6_ARATH; Protein FAR1-RELATED SEQUENCE 6
TrEMBL	A0A251PXJ9	0.0	A0A251PXJ9_PRUPE; Uncharacterized protein
STRING	XP_009336308.1	0.0	(Pyrus x bretschneideri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF40	30	530

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G52520.1	0.0	FAR1-related sequence 6

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]