PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Pbr026779.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
|
||||||||
Family | FAR1 | ||||||||
Protein Properties | Length: 669aa MW: 76819.9 Da PI: 5.3676 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 70.7 | 3.3e-22 | 60 | 142 | 2 | 90 |
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 fYn YAk+ GF vr+s++ ++ +++e ++ ++ Cs g++++++ + r+r+etrtgC a++k +++++++w+v+++eleHnH ++ Pbr026779.1 60 FYNCYAKQQGFGVRVSNTWYR-KSKERYRGKLSCSSAGFKKKSEAN-----RPRPETRTGCPAMIKFRLMDSNRWRVIEIELEHNHLIS 142 9***************99997.66779**************99888.....***********************************876 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 2.5E-19 | 60 | 142 | IPR004330 | FAR1 DNA binding domain |
Pfam | PF10551 | 1.4E-26 | 263 | 357 | IPR018289 | MULE transposase domain |
Pfam | PF04434 | 3.3E-6 | 550 | 583 | IPR007527 | Zinc finger, SWIM-type |
PROSITE profile | PS50966 | 9.198 | 550 | 586 | IPR007527 | Zinc finger, SWIM-type |
SMART | SM00575 | 1.4E-5 | 561 | 588 | IPR006564 | Zinc finger, PMZ-type |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 669 aa Download sequence Send to blast |
MDEVSLNTEP AGQDDADEFE IEGDCAMTDF ISQTGIIQGE NPLPPVVGME FDSYEDVYYF 60 YNCYAKQQGF GVRVSNTWYR KSKERYRGKL SCSSAGFKKK SEANRPRPET RTGCPAMIKF 120 RLMDSNRWRV IEIELEHNHL ISPASGKFYK SHKAIGVGTK RALQMDTSED VQKIRLFRTV 180 IVDSEGNGSM DGDEGESGNR VDYSSQLKLK EGDAQAVQNH FSRLQLMDPN FFYVVDLNEK 240 GCLRNLFWAD AKTRVAYSYF NDVVSIDTKC VENKFEVPLV SFIGVNHHGQ SVLLGCGLIA 300 SETVESFTWL FRAWLTCIMG RPPQAIITSQ CRTLQTAISD VFPRASHCLC LSHIMQKVPE 360 IFGGLFEYES IKESLSRAVY HSLRVEEFEA AWEDMVQHHG IRDHNWLQAL YEDRKRWVPV 420 YLKDIFLAGM FPAQPSEVVS SFFEEFLDRD TPLKEFLDKY DQALQTHHHL EALADLDSRN 480 SSYTLESRCY FELQLSKLYT NDILRKFEKE VEGMYSCFST SQLNADGPVI TYVVKEQTES 540 DGNRRETRDY EVLYNPSEME ILCFCGMFNL RGYLCRHALS VLNQNGVEEI PAQYVLSRWR 600 KDIERNYIFD HSCSGIDINN PVHRYDHLYK CIVQVVEEGR KSEGRCKVAL GALDEILKKL 660 CLREDPAL* |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Pbr026779.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_009336308.2 | 0.0 | PREDICTED: uncharacterized protein LOC103928916 | ||||
TrEMBL | M5WRA1 | 0.0 | M5WRA1_PRUPE; Uncharacterized protein | ||||
STRING | XP_009336306.1 | 0.0 | (Pyrus x bretschneideri) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF40 | 30 | 530 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G52520.1 | 0.0 | FAR1-related sequence 6 |