PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr026779.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family FAR1
Protein Properties Length: 669aa    MW: 76819.9 Da    PI: 5.3676
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr026779.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR170.73.3e-2260142290
         FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                  fYn YAk+ GF vr+s++ ++ +++e ++ ++ Cs  g++++++ +     r+r+etrtgC a++k +++++++w+v+++eleHnH ++
  Pbr026779.1  60 FYNCYAKQQGFGVRVSNTWYR-KSKERYRGKLSCSSAGFKKKSEAN-----RPRPETRTGCPAMIKFRLMDSNRWRVIEIELEHNHLIS 142
                  9***************99997.66779**************99888.....***********************************876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031012.5E-1960142IPR004330FAR1 DNA binding domain
PfamPF105511.4E-26263357IPR018289MULE transposase domain
PfamPF044343.3E-6550583IPR007527Zinc finger, SWIM-type
PROSITE profilePS509669.198550586IPR007527Zinc finger, SWIM-type
SMARTSM005751.4E-5561588IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 669 aa     Download sequence    Send to blast
MDEVSLNTEP AGQDDADEFE IEGDCAMTDF ISQTGIIQGE NPLPPVVGME FDSYEDVYYF  60
YNCYAKQQGF GVRVSNTWYR KSKERYRGKL SCSSAGFKKK SEANRPRPET RTGCPAMIKF  120
RLMDSNRWRV IEIELEHNHL ISPASGKFYK SHKAIGVGTK RALQMDTSED VQKIRLFRTV  180
IVDSEGNGSM DGDEGESGNR VDYSSQLKLK EGDAQAVQNH FSRLQLMDPN FFYVVDLNEK  240
GCLRNLFWAD AKTRVAYSYF NDVVSIDTKC VENKFEVPLV SFIGVNHHGQ SVLLGCGLIA  300
SETVESFTWL FRAWLTCIMG RPPQAIITSQ CRTLQTAISD VFPRASHCLC LSHIMQKVPE  360
IFGGLFEYES IKESLSRAVY HSLRVEEFEA AWEDMVQHHG IRDHNWLQAL YEDRKRWVPV  420
YLKDIFLAGM FPAQPSEVVS SFFEEFLDRD TPLKEFLDKY DQALQTHHHL EALADLDSRN  480
SSYTLESRCY FELQLSKLYT NDILRKFEKE VEGMYSCFST SQLNADGPVI TYVVKEQTES  540
DGNRRETRDY EVLYNPSEME ILCFCGMFNL RGYLCRHALS VLNQNGVEEI PAQYVLSRWR  600
KDIERNYIFD HSCSGIDINN PVHRYDHLYK CIVQVVEEGR KSEGRCKVAL GALDEILKKL  660
CLREDPAL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr026779.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009336308.20.0PREDICTED: uncharacterized protein LOC103928916
TrEMBLM5WRA10.0M5WRA1_PRUPE; Uncharacterized protein
STRINGXP_009336306.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF4030530
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G52520.10.0FAR1-related sequence 6